GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000551-TA|BGIBMGA000551-PA|IPR012336|Thioredoxin-like
fold
         (121 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po...    26   1.4  
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    25   4.4  
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...    24   5.8  

>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 81  PSTSPYCLKVETWLRLAGIKYEIISCFPQT 110
           PS+     K+E WL  A +K E   C+ +T
Sbjct: 296 PSSKKRIRKIEEWLPEAQVKRETSDCYHET 325


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 4  EVTNNIPENAPEKEKDMKEDAPAD 27
          E T N PE +P +   +K D PA+
Sbjct: 37 EDTTNDPERSPSERPSLKIDIPAN 60


>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)

Query: 8   NIPENAPEKEKDMKEDA 24
           N P NAPE E + K DA
Sbjct: 254 NAPSNAPEGEAEPKADA 270


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.132    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 533,308
Number of Sequences: 5004
Number of extensions: 17121
Number of successful extensions: 41
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38
Number of HSP's gapped (non-prelim): 3
length of query: 121
length of database: 2,362,478
effective HSP length: 65
effective length of query: 56
effective length of database: 2,037,218
effective search space: 114084208
effective search space used: 114084208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)