GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000551-TA|BGIBMGA000551-PA|IPR012336|Thioredoxin-like
fold
         (121 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0184 + 41846416-41847132                                         27   4.1  
10_08_0950 + 21764902-21765912                                         27   5.4  
04_04_0287 - 24156285-24156389,24156477-24156596,24156654-241567...    27   5.4  
01_07_0180 + 41832357-41832680,41833024-41833367,41833789-418339...    27   5.4  
10_02_0137 - 5730778-5730873,5732137-5732334,5732413-5732625,573...    26   7.1  
03_05_0874 - 28429982-28430083,28430284-28430472,28430585-284306...    26   7.1  

>01_07_0184 + 41846416-41847132
          Length = 238

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 84  SPYCLKVETWLRLAGIKYEII 104
           SPY  + E  LRL G+ YE+I
Sbjct: 17  SPYSQRAEAALRLKGVPYELI 37


>10_08_0950 + 21764902-21765912
          Length = 336

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)

Query: 10  PENAPEKEKDMKEDAPADNGQSK 32
           P ++P  E+D +E+A AD G+S+
Sbjct: 178 PVSSPSSEEDEEEEAAADAGRSR 200


>04_04_0287 -
           24156285-24156389,24156477-24156596,24156654-24156740,
           24156905-24157057,24157516-24157635,24157788-24157949,
           24158029-24158247,24158574-24158616,24159147-24159210,
           24159353-24159458,24159585-24159704,24159831-24159911,
           24160008-24160050,24160308-24160369,24160477-24160563,
           24161004-24161050,24161144-24161276,24161419-24161487,
           24161924-24162010,24162317-24162448
          Length = 679

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 4   EVTNNIPENAPEKEKDMKEDAPADNGQSK 32
           E +NN+ +N   +E ++ ED+    GQS+
Sbjct: 366 EPSNNVEDNLGNEEDEIMEDSETTGGQSE 394


>01_07_0180 +
           41832357-41832680,41833024-41833367,41833789-41833945,
           41834119-41834430,41834537-41834908
          Length = 502

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 84  SPYCLKVETWLRLAGIKYEII 104
           SP+  +VE  LRL G+ YE+I
Sbjct: 16  SPFVHRVEVALRLKGVPYELI 36


>10_02_0137 -
           5730778-5730873,5732137-5732334,5732413-5732625,
           5732748-5732870,5733726-5733841,5734530-5734897,
           5735498-5735649,5736557-5736715,5737773-5737946
          Length = 532

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 10  PENAPEKEKDMKEDAPADNGQSKEAP 35
           P  AP K+KD  +D P DN  +K  P
Sbjct: 371 PVLAP-KQKDQPKDEPVDNSPAKPTP 395


>03_05_0874 -
           28429982-28430083,28430284-28430472,28430585-28430655,
           28430754-28431021,28432579-28432818,28433791-28433979
          Length = 352

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 10/23 (43%), Positives = 17/23 (73%)

Query: 1   MTVEVTNNIPENAPEKEKDMKED 23
           M  E+ +NI EN+P+ +K+ KE+
Sbjct: 299 MFKELWDNITENSPKDQKEFKEE 321


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.132    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,168,715
Number of Sequences: 37544
Number of extensions: 96331
Number of successful extensions: 266
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 260
Number of HSP's gapped (non-prelim): 7
length of query: 121
length of database: 14,793,348
effective HSP length: 74
effective length of query: 47
effective length of database: 12,015,092
effective search space: 564709324
effective search space used: 564709324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)