GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000551-TA|BGIBMGA000551-PA|IPR012336|Thioredoxin-like
fold
         (121 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61310.1 68414.m06910 disease resistance protein (CC-NBS-LRR ...    27   4.5  
At3g62690.1 68416.m07042 zinc finger (C3HC4-type RING finger) fa...    26   6.0  
At2g19080.1 68415.m02228 metaxin-related contains 1 transmembran...    26   6.0  
At2g17600.1 68415.m02036 DC1 domain-containing protein contains ...    26   7.9  

>At1g61310.1 68414.m06910 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 925

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 61  KTNFEKDVVYLYQFSRTPLLPSTSPYCLKVETWLRLAGIKYEIISC 106
           K  F  ++V     S+ PLL +  P CLK E+ L L  + Y + SC
Sbjct: 874 KNRFLPEMVSTSTSSKDPLLRNGIPRCLKSESTLLLLILLY-LSSC 918


>At3g62690.1 68416.m07042 zinc finger (C3HC4-type RING finger)
           family protein (ATL5) identical to RING-H2 zinc finger
           protein ATL5 [Arabidopsis thaliana]
           gi|4928401|gb|AAD33583
          Length = 257

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 14  PEKEKDMKEDAPADNGQSKEAPL 36
           P + +D   D PADNG ++ A L
Sbjct: 229 PREFQDSNSDLPADNGSNRRASL 251


>At2g19080.1 68415.m02228 metaxin-related contains 1 transmembrane
           domain; similar to Metaxin 1 (component of a preprotein
           import complex) (Swiss-Prot:P47802) [Mus musculus];
          Length = 315

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 80  LPSTSPYCLKVETWLRLAGIKYEII--SCFPQTNIL 113
           LP+  P CL    +L+LA + +E+   S FP ++ L
Sbjct: 21  LPTACPNCLPAYIYLKLAQLPFELAFNSTFPDSDEL 56


>At2g17600.1 68415.m02036 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 580

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 3/35 (8%)

Query: 72  YQFSRTPLLPSTSPYCLKVETWLRLAGIKYEIISC 106
           ++ S TP LP T+P C       +   IKY   SC
Sbjct: 201 HRLSHTPFLPPTTPSC---RVCYKTVDIKYGQYSC 232


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.132    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,664,516
Number of Sequences: 28952
Number of extensions: 83007
Number of successful extensions: 234
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 232
Number of HSP's gapped (non-prelim): 4
length of query: 121
length of database: 12,070,560
effective HSP length: 73
effective length of query: 48
effective length of database: 9,957,064
effective search space: 477939072
effective search space used: 477939072
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)