GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000550-TA|BGIBMGA000550-PA|undefined
         (1178 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    33   0.31 
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    31   1.3  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    31   1.3  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    29   2.9  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    28   6.7  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    28   6.7  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    28   6.7  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    28   8.8  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    28   8.8  

>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 4/48 (8%)

Query: 940 ETLQNFLANTEYDNTTWVPDLNYYLSLVNRMV---DSILFH-KTTKQK 983
           ET++N + + +Y+N+T +  L  Y  ++N ++   +S L+H   TK+K
Sbjct: 678 ETIENLIESFDYENSTPLSQLTKYTEIINDLITCLNSFLYHVSATKKK 725


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 144 NPWRLDPTTLKFSLKGNLPYDDEL-LKPQIGLIRHVLQQPYSRDMMCSMLGLQKQHKQQC 202
           +PW+L PT  KF    N+PY   + L+   G+++++++   +R     +  ++    ++ 
Sbjct: 350 SPWQLWPTLSKFFTNDNMPYISSIYLRHFNGVLQNIIEPAAARKRSSLLTAIRSLGDRKI 409

Query: 203 IALED 207
           + + D
Sbjct: 410 VLIGD 414


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 157 LKGNLPYDDELLKPQIGLIRHVLQQPYSRDMMCSMLGLQKQHKQQC-IALEDQLVELMIL 215
           L+  LPY +  L+ Q  L++      +S D    ++GL ++    C + L  ++   M+ 
Sbjct: 436 LRSQLPYSEGWLEDQTILLKSYFDTSFSLDFHVYLIGLFRKVLFACPVELRPEVYARMLC 495

Query: 216 PMEKSEQENDED 227
           P+ KS  ++  +
Sbjct: 496 PLVKSLDKSSSE 507


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 26/102 (25%), Positives = 52/102 (50%), Gaps = 12/102 (11%)

Query: 72  QNADFWIECFSLIRRIIGGVDYKGVREIMKQLAKLLTSFVES-TKPCAQMVSII-GHSNM 129
           +  D ++E F ++R      D K +RE +++   L+TS +++ TK  +Q +     HS  
Sbjct: 240 EREDAYVEKFDIVR------DKKSIRETVQRC--LITSHLDTLTKGISQFIEKRDAHSCK 291

Query: 130 L--PVVEFSGFADHLVNPWRLDPTTLKFSLKGNLPYDDELLK 169
           L   +++F+   ++L+ PW      + F L  +   DD L++
Sbjct: 292 LLYALLQFNHETEYLIQPWSDCLVDVGFKLVNDESKDDTLVQ 333


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 294 LSNFIPIIKLHELLYPEKDPLPVPDYSKAHCT 325
           LSNF+PII   +LL+P   P  + ++ K  CT
Sbjct: 24  LSNFLPIINDLQLLHPASAPPLLSEFQK-QCT 54


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 6/110 (5%)

Query: 564  SSGVQLQMSRVVSEPKSLVSSESEELNRVLVLTLARGIHMAGAGSDGAAVKELLTTIMTN 623
            +S  Q  +    SEP+ +V+S+ E  N    L  A   ++     D  + KELL  I  N
Sbjct: 1040 NSPFQALIKHFCSEPQKVVNSQLELHNSAYSLD-AISQNLLPMLKDLHS-KELLPAICFN 1097

Query: 624  TPHMWSQHTLQCFPPVLVEFFNQISAQKENKQLLKKSVEEEYRKWTSMAN 673
                  ++  +     LVE   +    +EN +  K+ + E Y+KW S AN
Sbjct: 1098 YDRQECEYLAEIVFKTLVEKERE---WRENSEEWKEKMRE-YKKWQSTAN 1143


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 1004 NPSAHAL-YVTCVELMSLPVAPNYVGNSLLDVITKGFVVIPTTKLQLWINAIGLIMAALP 1062
            N S+H L  V  +  M++PV PN     +  ++ +G++ +   +  L + +I L+++   
Sbjct: 1108 NNSSHELSLVAFIREMAMPV-PNDEFKKISTILARGYLALDEDESYLPLLSIHLLISRNH 1166

Query: 1063 DPY 1065
            DPY
Sbjct: 1167 DPY 1169


>SPBC1289.12 |usp109||U1 snRNP-associated protein
            Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 973  SILFHKTTKQKYTMMGNSHFPNTDWRFNEYPNPSAHALYV 1012
            SIL H     K T + +  F  T    N++ +P+  A+YV
Sbjct: 141  SILVHSVKSDKNTYLSSPGFYGTPQPLNQFTDPNNTAVYV 180


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 7/54 (12%)

Query: 325 THQMAVVCIWMHLLKKAETEHKTMTMPP------NLKVQYDFLQHLMTSNNIPT 372
           TH  + +C   H L++   EH      P      NLKV Y F  + + S ++PT
Sbjct: 412 THNRSFICSLPHFLRRWSNEHGRKFFVPVEPSSKNLKVPYSFNNYYVVS-SMPT 464


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.137    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,606,074
Number of Sequences: 5004
Number of extensions: 247791
Number of successful extensions: 646
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 644
Number of HSP's gapped (non-prelim): 9
length of query: 1178
length of database: 2,362,478
effective HSP length: 81
effective length of query: 1097
effective length of database: 1,957,154
effective search space: 2146997938
effective search space used: 2146997938
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 59 (27.9 bits)