Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000550-TA|BGIBMGA000550-PA|undefined
(1178 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 93 9e-19
12_02_0784 - 23130783-23131273,23131701-23131778,23131913-231319... 34 0.78
11_01_0598 - 4775919-4775928,4776670-4776887 33 1.4
01_06_0009 - 25535480-25535529,25536225-25536252,25536427-255364... 31 5.5
11_03_0181 - 11301759-11301838,11302294-11303095 31 7.3
09_02_0224 - 5984128-5984923,5985667-5986718,5986800-5987776,598... 30 9.6
04_01_0590 + 7793958-7794148,7794826-7794967,7799292-7800548 30 9.6
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 93.5 bits (222), Expect = 9e-19
Identities = 116/519 (22%), Positives = 224/519 (43%), Gaps = 60/519 (11%)
Query: 412 PNGSTTAPLPTVPLSMCILDSLTLHCKMSLIHSIVTHVAKLAQNKTNIPGNNMMSPALVE 471
PN T T PLSM +L L+++ + L + +T G N+ S A+VE
Sbjct: 645 PNERMTMMRETYPLSMSLLSGLSINLCLKLAFQL---------EETIFLGQNVPSIAIVE 695
Query: 472 TYSRLLVYTEIESLGIKGF--INQLLPNVFKSHAWGILHDLLDMFSYRI-----HHVQPH 524
TY RLL+ T SL F + Q P++ +L LL++ +YR+ +H +
Sbjct: 696 TYVRLLLITP-HSLFRPHFTTLTQRSPSILSKSGVSLL--LLEILNYRLLPLYRYHGKSK 752
Query: 525 YRVQLLSNIHSLAAYPQANQTQLQLCFESTALRLITSLGSSGVQLQMSRVVSEPKSLVSS 584
+ ++ I S+ + +L E+ + LI SL + + + + P
Sbjct: 753 ALMYDVTKIISMIKVKRGEHRLFRLA-ENLCMNLILSLRDFFL---VKKELKGPTEF--- 805
Query: 585 ESEELNRVLVLTLARGIHMAGAGSDGAAV--KELLTTIMTNTPHMWSQHTLQCFPPVLVE 642
+E LNR+ +++LA + G + + LL IM + H WS+ TL+ FPP++ +
Sbjct: 806 -TETLNRITIISLAITMKTRGIAEVEHIIHLQPLLEQIMATSQHTWSEKTLRYFPPLIRD 864
Query: 643 F-FNQISAQKENKQLLKKSVEEEYRKWTSMANDN-------DIISHFSVPGTPLFLCL-L 693
F ++ + + Q +++ + + + + +SH S P +LC
Sbjct: 865 FLMGRMDKRGQAIQAWQQAETTVINQCNQLLSPSAEPTYVMTYLSH-SFPQHRQYLCAGA 923
Query: 694 WKMIFETNRINPIAF-KILERIGARALSAHLRKFCDYLVFEVTDPAGGPH-----IYKCV 747
W ++ IN ++L ++A++ D L+ + H + K +
Sbjct: 924 WMLMNGHLEINSANLARVLREFSPEEVTANIYTMVDVLLHHIQLELQRGHQIQDLLSKAI 983
Query: 748 DAINDIIWKYNIVTIDRLVLCLVLRPNPDGNESQVSLYIIQLLLLHGFELRNRVQDFVKE 807
+ IW + ++ +D L+L L+ D ++ +L ++ + LL EL+ R++ F
Sbjct: 984 TNLAFFIWTHELLPLDILLLALI-----DRDDDPYALRLV-INLLERPELQQRIKAFCTS 1037
Query: 808 NSPEHWKQNNWYEKHLAFQRKYPEKFTPEEASGAYGAPIPVYLSNVCLRLIPVFDIVVHR 867
SPEHW +N K + Q+ + +E P + ++ RL+ V ++++R
Sbjct: 1038 RSPEHWLKNQ-PPKRVELQKALGNHLSGKER-------YPPFFDDIAARLLLVIPLIIYR 1089
Query: 868 HLEIHQVAKYLEQLLEHLGYLYKFHDRPITFLYNTLHYY 906
+E + +++L FH TF+ + L Y+
Sbjct: 1090 LIE-NDATDIADRVLAVYSTFLAFHPLRFTFVRDILAYF 1127
>12_02_0784 -
23130783-23131273,23131701-23131778,23131913-23131969,
23132062-23132116,23132738-23133010
Length = 317
Score = 33.9 bits (74), Expect = 0.78
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 799 NRVQDFVKENSPEHWKQNNWYEKHLAFQRK 828
++VQDFV+E W+ NNW + LA++ K
Sbjct: 151 SKVQDFVREKKGRIWRLNNWGLRRLAYKIK 180
>11_01_0598 - 4775919-4775928,4776670-4776887
Length = 75
Score = 33.1 bits (72), Expect = 1.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 1038 GFVVIPTTKLQLWINAIGLIMAALPDPYW 1066
G+VV+P + W+ A+GL + ALP +W
Sbjct: 38 GYVVLPPHEAPHWLPAVGLALVALPWAFW 66
>01_06_0009 -
25535480-25535529,25536225-25536252,25536427-25536496,
25537020-25537063,25538064-25538228,25538411-25538491,
25539224-25540258
Length = 490
Score = 31.1 bits (67), Expect = 5.5
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 282 LQFISGSIQRHPLSNFIPIIKLHELLYPEKDPLPVPDYSKAHCTHQMAVVCIWMHLL 338
L F+S IQ + NF+ +K + P + PD HCT ++A ++H+L
Sbjct: 351 LLFLSAIIQAYLTKNFLFNLKQDGKVLPNGPVVISPDVYFLHCTRKVASSLQYLHIL 407
>11_03_0181 - 11301759-11301838,11302294-11303095
Length = 293
Score = 30.7 bits (66), Expect = 7.3
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 161 LPYDDELLKPQIGLIRHVLQQPYSRDMMCSM-LGLQKQ-HKQQCIALEDQLVELMILPME 218
+P DDE+L+ Q L RH L S + C++ LG+ H+ A LV + LP
Sbjct: 12 VPTDDEMLQTQAELWRHTLSYLTSMTLRCAVHLGIPTAIHRHGGAASLPDLVTALSLPTA 71
Query: 219 K 219
K
Sbjct: 72 K 72
>09_02_0224 -
5984128-5984923,5985667-5986718,5986800-5987776,
5988427-5989228,5990966-5991016,5992391-5993464,
5994458-5994706
Length = 1666
Score = 30.3 bits (65), Expect = 9.6
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 562 LGSSGVQLQMSRVVSEPKSLVSSESEELNRVLVLTLARGIHMAGAGSDGAAVKELLTTIM 621
L SS ++S + S + +++ S+ L V + I++ GSDGA+ K ++ +
Sbjct: 689 LPSSNSNHELSSLSSPTEHVIADGSKSLQLVPASKINGSINLITMGSDGASRKRSISDLF 748
Query: 622 TNTPHM 627
N P +
Sbjct: 749 LNLPSL 754
>04_01_0590 + 7793958-7794148,7794826-7794967,7799292-7800548
Length = 529
Score = 30.3 bits (65), Expect = 9.6
Identities = 18/65 (27%), Positives = 27/65 (41%)
Query: 337 LLKKAETEHKTMTMPPNLKVQYDFLQHLMTSNNIPTLGSDYRIALLCNAYSTNQEYYARP 396
L K AE + T+ + L + ++ S N P D I N +STN + RP
Sbjct: 420 LTKTAEIQRTTLRLSHQLVSSNSNIDDIIHSTNAPPAAPDSAINHNNNTFSTNHSLHLRP 479
Query: 397 MGIII 401
I+
Sbjct: 480 QQRIV 484
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.323 0.137 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,974,919
Number of Sequences: 37544
Number of extensions: 1441321
Number of successful extensions: 2910
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2899
Number of HSP's gapped (non-prelim): 9
length of query: 1178
length of database: 14,793,348
effective HSP length: 90
effective length of query: 1088
effective length of database: 11,414,388
effective search space: 12418854144
effective search space used: 12418854144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 65 (30.3 bits)
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