GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000550-TA|BGIBMGA000550-PA|undefined
         (1178 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5088| Best HMM Match : No HMM Matches (HMM E-Value=.)              187   4e-47
SB_37194| Best HMM Match : Pigment_DH (HMM E-Value=4.9)               117   6e-26
SB_53983| Best HMM Match : No HMM Matches (HMM E-Value=.)             116   1e-25
SB_13538| Best HMM Match : Pigment_DH (HMM E-Value=4.9)               100   8e-21
SB_18850| Best HMM Match : No HMM Matches (HMM E-Value=.)              97   1e-19
SB_3112| Best HMM Match : No HMM Matches (HMM E-Value=.)               96   2e-19
SB_12223| Best HMM Match : ShTK (HMM E-Value=1.8e-09)                  36   0.26 
SB_57032| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.34 
SB_2969| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   7.3  
SB_6235| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   9.6  

>SB_5088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score =  187 bits (456), Expect = 4e-47
 Identities = 90/200 (45%), Positives = 131/200 (65%), Gaps = 19/200 (9%)

Query: 581 LVSSESEELNRVLVLTLARGIHMAGAGSDGAAVKELLTTIMTNTPHMWSQHTLQCFPPVL 640
           ++S+ESEELNR LVLT+AR +H+ GA S G     +L  ++ NTPH W+ HTL CFP  L
Sbjct: 1   ILSAESEELNRALVLTIARSMHVTGAESSGNWCDGILGVLIANTPHSWASHTLACFPQPL 60

Query: 641 VEFFNQISAQK--ENKQLLKKSVEEEYRKWTSMANDNDIISHFSVPGTPLFLCLLWKMIF 698
            +F+++    +  + KQ L+  VEEEYR+W SM +++++++HF+ P   L    +W    
Sbjct: 61  QQFYSENPTDRPVKTKQALRNHVEEEYRRWKSMTSEHELLAHFTDP--TLSNVFIW---- 114

Query: 699 ETNRINPIAFKILERIGARALSAHLRKFCDYLVFEVTDPAGGPHIYKCVDAINDIIWKYN 758
                      ILE++GARALS+H+R F D+LV+E +   GG H+ KC+  +ND+IWKYN
Sbjct: 115 -----------ILEQLGARALSSHVRFFADFLVYEFSTSGGGKHVNKCIQHLNDLIWKYN 163

Query: 759 IVTIDRLVLCLVLRPNPDGN 778
           +VT+DRLVLCLV    P G+
Sbjct: 164 VVTLDRLVLCLVRNTRPPGS 183


>SB_37194| Best HMM Match : Pigment_DH (HMM E-Value=4.9)
          Length = 371

 Score =  117 bits (281), Expect = 6e-26
 Identities = 63/167 (37%), Positives = 95/167 (56%), Gaps = 29/167 (17%)

Query: 57  RMLCDCILTNEKLIYQNADFWIECFSLIRRIIGGVDYKGVREIM---------------- 100
           R +C+ +L +E L + +   W + F L+R I GG DYKG R+++                
Sbjct: 78  RSVCEAVLKSEHLKFDDEVKWCKSFQLLRVISGGTDYKGCRDVLSLVFQKFNLIPKEPDP 137

Query: 101 ----------KQLAKLLTSFVESTKPCAQMVSIIGHSNMLPVVEFSGFADHLVNPWRLDP 150
                     K L+KLL+ +V+S +P A MV++ G   +LP++   G     +  W+LDP
Sbjct: 138 AYTDRIECAVKSLSKLLSDYVDSFRPLAHMVTVTGRPLLLPII---GHPSSSIGVWKLDP 194

Query: 151 TTLKFSLKGNLPYDDELLKPQIGLIRHVLQQPYSRDMMCSMLGLQKQ 197
            TL F +KG LPY+  L KPQ  L+++V+ QPYSR+++CSMLGL KQ
Sbjct: 195 ATLSFPMKGLLPYNKSLFKPQKNLLQYVIGQPYSREIICSMLGLNKQ 241


>SB_53983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score =  116 bits (278), Expect = 1e-25
 Identities = 50/96 (52%), Positives = 75/96 (78%)

Query: 199 KQQCIALEDQLVELMILPMEKSEQENDEDEMSPTHWCWLHLSSQVIYLILIGFASFPNIV 258
           KQ+C+ALE+ LV+L+++ MEKSE +    + +     W HLSS +I+ +L  FASFP++V
Sbjct: 52  KQRCLALEELLVDLIVIAMEKSEHDQSGLDDTACQLLWQHLSSHLIFFVLFQFASFPHMV 111

Query: 259 MGLHNKLVGHDMKKGRDHLMWVLLQFISGSIQRHPL 294
           + L++KL G ++++GRDHLMWVLLQFISGSIQ++P+
Sbjct: 112 LALYDKLQGRNLRQGRDHLMWVLLQFISGSIQKNPV 147


>SB_13538| Best HMM Match : Pigment_DH (HMM E-Value=4.9)
          Length = 223

 Score =  100 bits (239), Expect = 8e-21
 Identities = 45/95 (47%), Positives = 66/95 (69%), Gaps = 3/95 (3%)

Query: 103 LAKLLTSFVESTKPCAQMVSIIGHSNMLPVVEFSGFADHLVNPWRLDPTTLKFSLKGNLP 162
           L+KLL+ +V+S +P A MV++ G   +LP++   G     +  W+LDP TL F +KG LP
Sbjct: 2   LSKLLSDYVDSFRPLAHMVTVTGRPLLLPII---GHPSSSIGVWKLDPATLSFPMKGLLP 58

Query: 163 YDDELLKPQIGLIRHVLQQPYSRDMMCSMLGLQKQ 197
           Y+  L KPQ  L+++V+ QPYSR+++CSMLGL KQ
Sbjct: 59  YNKSLFKPQKNLLQYVIGQPYSREIICSMLGLNKQ 93


>SB_18850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 96.7 bits (230), Expect = 1e-19
 Identities = 44/76 (57%), Positives = 55/76 (72%), Gaps = 5/76 (6%)

Query: 992  FPNTDWRFNEYPNPSAHALYVTCVELMSLPVAPNYVGNSLLDVITKGFVVIP-----TTK 1046
            FP  DWRFNE+PNP+AHAL+VTCVELM+LPV+   VG  L DVI +G  V+P       +
Sbjct: 13   FPTCDWRFNEFPNPAAHALHVTCVELMALPVSGKQVGFRLFDVIYRGSTVVPRESRMRDQ 72

Query: 1047 LQLWINAIGLIMAALP 1062
            L  WINA+GL+M +LP
Sbjct: 73   LMAWINAVGLVMTSLP 88


>SB_3112| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 95.9 bits (228), Expect = 2e-19
 Identities = 43/90 (47%), Positives = 61/90 (67%), Gaps = 2/90 (2%)

Query: 581 LVSSESEELNRVLVLTLARGIHMAGAGSDGAAVKELLTTIMTNTPHMWSQHTLQCFPPVL 640
           ++S+ESEELNR LVLT+AR +H+ GA S G     +L  ++ NTPH W+ HTL CFP  L
Sbjct: 1   ILSAESEELNRALVLTIARSMHVTGAESSGNWCDGILGVLIANTPHSWASHTLACFPQPL 60

Query: 641 VEFFNQISAQK--ENKQLLKKSVEEEYRKW 668
            +F+++    +  + KQ L+  VEEEYR+W
Sbjct: 61  QQFYSENPTDRPVKTKQALRNHVEEEYRRW 90


>SB_12223| Best HMM Match : ShTK (HMM E-Value=1.8e-09)
          Length = 542

 Score = 35.5 bits (78), Expect = 0.26
 Identities = 34/140 (24%), Positives = 55/140 (39%), Gaps = 7/140 (5%)

Query: 298 IPIIKLHELLYPEKDPLPVPDYSKAHCTHQMAVVCIWMHLLKKAETEHKTMTMPPNLKVQ 357
           I ++ LH L  P+     VP  +  +C + + +VC  +H L   +T H   ++P N  V 
Sbjct: 299 IRLVCLHNLHNPDTHHPSVPGNTLVNCDYAIRLVC--LHNLHNPDTRHP--SIPGNTLVN 354

Query: 358 YDFLQHLMTSNNIPTLGSDYRIALLCNAYSTNQEYYARPMGIIIETLFGNQKPLPNGSTT 417
            D+   L+  NN+     D R   +      N +Y  R     + T  G Q P      T
Sbjct: 355 CDYAIRLVCLNNLH--NPDTRHPSVPGNTLVNCDYAIRRGTGAVPTQ-GTQGPTTVAPRT 411

Query: 418 APLPTVPLSMCILDSLTLHC 437
              P   +     D ++  C
Sbjct: 412 ESTPAPVIGCVDYDVISFQC 431



 Score = 34.7 bits (76), Expect = 0.45
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 298 IPIIKLHELLYPEKDPLPVPDYSKAHCTHQMAVVCIWMHLLKKAETEHKTMTMPPNLKVQ 357
           I ++ LH L  P+     VP  +  +C + + +VC  +H L   +T H   ++P N  V 
Sbjct: 209 IRLVCLHNLHNPDTRHPSVPGNTLVNCDYAIRLVC--LHNLHNPDTRHP--SIPGNTLVN 264

Query: 358 YDFLQHLMTSNNI 370
            D+   L+  NN+
Sbjct: 265 CDYAIRLVCLNNL 277



 Score = 33.1 bits (72), Expect = 1.4
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 298 IPIIKLHELLYPEKDPLPVPDYSKAHCTHQMAVVCIWMHLLKKAETEHKTMTMPPNLKVQ 357
           I ++ LH L  P+     VP  +  +C + + +VC  +H L   +T H   ++P N  V 
Sbjct: 149 IRLVCLHNLHNPDTHHPSVPGNTLVNCDYAIRLVC--LHNLHNPDTRHP--SIPGNTLVN 204

Query: 358 YDFLQHLMTSNNI 370
            D+   L+  +N+
Sbjct: 205 CDYAIRLVCLHNL 217



 Score = 32.7 bits (71), Expect = 1.8
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 298 IPIIKLHELLYPEKDPLPVPDYSKAHCTHQMAVVCIWMHLLKKAETEHKTMTMPPNLKVQ 357
           I ++ LH L  P+     VP  +  +C + + +VC  +H L   +T H   ++P N  V 
Sbjct: 29  IRLVCLHNLHNPDTRHPSVPGNTLVNCDYAIRLVC--LHNLHNPDTRHP--SIPGNTLVN 84

Query: 358 YDFLQHLMTSNNI 370
            D+   L+  +N+
Sbjct: 85  CDYAIRLVCLHNL 97


>SB_57032| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 446

 Score = 35.1 bits (77), Expect = 0.34
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 179 LQQPYSRDMMCSMLGLQKQHKQQCIALEDQLVELMI--LPMEKSEQENDEDEMSPTHWCW 236
           L+ P+   MMC   G +  HK  C    D  + L++   P+  +  EN E+      W W
Sbjct: 111 LKHPFHTGMMCEQCGHKAAHKTNCENRHDMELPLLLPRRPVLTTPNEN-ENIAQYGFWLW 169

Query: 237 LHLSS 241
           LH+ +
Sbjct: 170 LHVDN 174


>SB_2969| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 30.7 bits (66), Expect = 7.3
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 562 LGSSGVQLQMSRVVSEPKSLVSSESEELNRVLVLTLARGIHMAG 605
           L SSGV++Q   V++    L+ + S ++NR +V  L   +H  G
Sbjct: 50  LVSSGVEIQKLSVITNLPKLLETNSADVNRRVVPLLRDAVHQLG 93


>SB_6235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 181

 Score = 30.3 bits (65), Expect = 9.6
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 10/81 (12%)

Query: 508 HDLLDMFSYRIHHVQPHYRVQLLSNIHSLAAYPQANQTQLQLCFESTALRLITSLGSSGV 567
           HD++D  +Y + HV  HY   L+  +  +  +P   +   ++ FE   L      G+SG+
Sbjct: 62  HDVVD--TYNVMHVVGHYVEALVFGV--MGEWPGEGE---EILFEDPFLN---EPGTSGL 111

Query: 568 QLQMSRVVSEPKSLVSSESEE 588
           QLQ    + + +S  S + EE
Sbjct: 112 QLQQQEGLGKKRSHDSDDDEE 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.137    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,334,467
Number of Sequences: 59808
Number of extensions: 1650138
Number of successful extensions: 3270
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3248
Number of HSP's gapped (non-prelim): 16
length of query: 1178
length of database: 16,821,457
effective HSP length: 90
effective length of query: 1088
effective length of database: 11,438,737
effective search space: 12445345856
effective search space used: 12445345856
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 65 (30.3 bits)