Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000550-TA|BGIBMGA000550-PA|undefined
(1178 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical pr... 79 1e-14
Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical pr... 79 1e-14
U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein. 79 1e-14
AF000265-4|AAK68198.1| 457|Caenorhabditis elegans Hypothetical ... 32 2.1
Z71260-1|CAA95798.1| 744|Caenorhabditis elegans Hypothetical pr... 31 4.9
Z67995-5|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical pr... 31 4.9
Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical pr... 31 4.9
U60113-1|AAB03334.1| 715|Caenorhabditis elegans SEM-4 short for... 31 4.9
U60112-1|AAB03333.1| 744|Caenorhabditis elegans SEM-4 long form... 31 4.9
>Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical protein
F39B2.4b protein.
Length = 1589
Score = 79.4 bits (187), Expect = 1e-14
Identities = 106/525 (20%), Positives = 214/525 (40%), Gaps = 55/525 (10%)
Query: 573 RVVSEPKSLVSSESEELNRVLVLTLARGIHMAGAGSDGAAVKELLTTIMTNTPHMWSQHT 632
+ S P + + E+ ++ + + R + + D A K + TI+ W + +
Sbjct: 725 KTFSVPDQYPFAINPEIFKMAIYSFLRAVKITA--QDIAIEKTMFPTIINGFG--WPEKS 780
Query: 633 LQCFPPVLVEFFNQISAQKE-NKQLLKKSVEEEYRKWTSMANDNDIISHFSVPGTPLFLC 691
FP ++ N + + V R TS+ + +I + C
Sbjct: 781 TSYFPKWALDAIKASDTSNAVNTEEILSDVRNTARMHTSLTPNQFVIRYGEDRDPATSHC 840
Query: 692 LL-------WKMIFETNRINPIAFKILERIGARALSAHLRKFCDYLVFEVTDPAGGPHIY 744
+L + + T I ++++E+ + + DY++ + +
Sbjct: 841 MLAVLFHFAYNSVDSTYNITSEFYEVMEKKTPKEIVVMGNYLVDYIIADAKTQDCNEKTF 900
Query: 745 KCV-DAINDIIWKYNIVTIDRLVLCLVLRPNPDGNESQVSLYIIQLLLLHGFELRNRVQD 803
K + A +++++ ++ DRL+L L++ P D ++ + + I +L E + R++
Sbjct: 901 KNIAKAAALLVFQFQVLRADRLLLSLIMHPATD-EDALICIQIANEFILTP-EFQERIR- 957
Query: 804 FVKENSPEHWKQNNWYEKHLAFQRKYPEKFTPEEA-------SGAYGAPIPVYLSNVCLR 856
+ +N P K++++ +++ KY + F EA + +P Y + R
Sbjct: 958 WYHQNVP---KKDHFPTEYIKAIVKYHDAFPEFEACELVRSYDSSSNVHMPTYYGCLIER 1014
Query: 857 LIPVFDIVVHRHLEIHQVAKYLEQLLEHLGYLYKFHDRPITFLYNTLHYYEXXXXXXXXX 916
L+P+ D +H LE Q K Q+L+ + LYKFH PI F+Y+ L +
Sbjct: 1015 LLPIMDQYLHVALE-QQGYKLNPQILQSVSMLYKFHAMPIHFMYSVL--FTSHGLMSGPD 1071
Query: 917 XXXXVGAVLGALKDVRPAGWAATETLQNFLANTEYDNTTWVPDLNYYLSLVNRMVDSILF 976
V A +++ TE + F N + + + L++RM S+ F
Sbjct: 1072 AKSFVLAFATQIEECH-----LTEAFEKF--NHQKSSRE-----QLIMELIDRMSASLDF 1119
Query: 977 HKTTKQKYTMMGNSHFPNTDWRFNEYPNPSAHALYVTCVELMSLPVAPNYVGNSLLDVIT 1036
T F DW+ E +P A LY+ C+ELM+ P +P + ++++V+
Sbjct: 1120 ILTPPP---------FVAKDWKIAEL-SPGAQTLYLACIELMASPHSPETLVAAMINVMQ 1169
Query: 1037 KGFVVIPTTKLQLWINAIGLIMAALPDPYWTVLHERLLELTTSSE 1081
+ P + +N L++ ALP Y LH+ + + + E
Sbjct: 1170 ----MKPHARPFNIVNLTALLLTALPAAYSNALHDEFVAVFVNGE 1210
Score = 34.3 bits (75), Expect = 0.52
Identities = 43/214 (20%), Positives = 81/214 (37%), Gaps = 12/214 (5%)
Query: 99 IMKQLAKLLTSFVESTKPCAQMVSIIGHSNMLPVVEFSGFADHLVNPWR---LDPTTLKF 155
++ +L + L S +P A + + G + P+ F L + W L+ +
Sbjct: 227 MLPRLTEKLASLSVHFRPIADLSHVCGRGFVYPIPLHPSFYP-LTSCWEEHGLNASNTIV 285
Query: 156 SLKGNLPYDDELLKPQIGLIRHVLQQPYSRDMMCSMLGLQKQHKQQCIALEDQLVELMIL 215
LPY E + + +L+QP +D L K + + L+ +MI
Sbjct: 286 QPHHTLPYRPEHTSTYLYTLYMILRQPLGKD------SLHPPSKTKTKTNWEMLISVMIC 339
Query: 216 PMEKSEQENDEDEMSPTHWCWLHLSSQVIYLILIGFASFPNIVMGLHNKLVGHDMKKGRD 275
+ E E P + W ++ + VIY I L N + + RD
Sbjct: 340 ESMAEAESLPETEPIPRYQ-WDNIVNIVIYGITQHLLVPKTFFNVLKNLIKRCKYTRARD 398
Query: 276 HLMWVLLQFISGSIQRHPLSNFI-PIIKLHELLY 308
+MW++ Q + L + + I++L+ L+
Sbjct: 399 EVMWIVFQVVGSLSNLTRLDDAVTEIVELYNELF 432
>Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical protein
F39B2.4a protein.
Length = 1587
Score = 79.4 bits (187), Expect = 1e-14
Identities = 106/525 (20%), Positives = 214/525 (40%), Gaps = 55/525 (10%)
Query: 573 RVVSEPKSLVSSESEELNRVLVLTLARGIHMAGAGSDGAAVKELLTTIMTNTPHMWSQHT 632
+ S P + + E+ ++ + + R + + D A K + TI+ W + +
Sbjct: 723 KTFSVPDQYPFAINPEIFKMAIYSFLRAVKITA--QDIAIEKTMFPTIINGFG--WPEKS 778
Query: 633 LQCFPPVLVEFFNQISAQKE-NKQLLKKSVEEEYRKWTSMANDNDIISHFSVPGTPLFLC 691
FP ++ N + + V R TS+ + +I + C
Sbjct: 779 TSYFPKWALDAIKASDTSNAVNTEEILSDVRNTARMHTSLTPNQFVIRYGEDRDPATSHC 838
Query: 692 LL-------WKMIFETNRINPIAFKILERIGARALSAHLRKFCDYLVFEVTDPAGGPHIY 744
+L + + T I ++++E+ + + DY++ + +
Sbjct: 839 MLAVLFHFAYNSVDSTYNITSEFYEVMEKKTPKEIVVMGNYLVDYIIADAKTQDCNEKTF 898
Query: 745 KCV-DAINDIIWKYNIVTIDRLVLCLVLRPNPDGNESQVSLYIIQLLLLHGFELRNRVQD 803
K + A +++++ ++ DRL+L L++ P D ++ + + I +L E + R++
Sbjct: 899 KNIAKAAALLVFQFQVLRADRLLLSLIMHPATD-EDALICIQIANEFILTP-EFQERIR- 955
Query: 804 FVKENSPEHWKQNNWYEKHLAFQRKYPEKFTPEEA-------SGAYGAPIPVYLSNVCLR 856
+ +N P K++++ +++ KY + F EA + +P Y + R
Sbjct: 956 WYHQNVP---KKDHFPTEYIKAIVKYHDAFPEFEACELVRSYDSSSNVHMPTYYGCLIER 1012
Query: 857 LIPVFDIVVHRHLEIHQVAKYLEQLLEHLGYLYKFHDRPITFLYNTLHYYEXXXXXXXXX 916
L+P+ D +H LE Q K Q+L+ + LYKFH PI F+Y+ L +
Sbjct: 1013 LLPIMDQYLHVALE-QQGYKLNPQILQSVSMLYKFHAMPIHFMYSVL--FTSHGLMSGPD 1069
Query: 917 XXXXVGAVLGALKDVRPAGWAATETLQNFLANTEYDNTTWVPDLNYYLSLVNRMVDSILF 976
V A +++ TE + F N + + + L++RM S+ F
Sbjct: 1070 AKSFVLAFATQIEECH-----LTEAFEKF--NHQKSSRE-----QLIMELIDRMSASLDF 1117
Query: 977 HKTTKQKYTMMGNSHFPNTDWRFNEYPNPSAHALYVTCVELMSLPVAPNYVGNSLLDVIT 1036
T F DW+ E +P A LY+ C+ELM+ P +P + ++++V+
Sbjct: 1118 ILTPPP---------FVAKDWKIAEL-SPGAQTLYLACIELMASPHSPETLVAAMINVMQ 1167
Query: 1037 KGFVVIPTTKLQLWINAIGLIMAALPDPYWTVLHERLLELTTSSE 1081
+ P + +N L++ ALP Y LH+ + + + E
Sbjct: 1168 ----MKPHARPFNIVNLTALLLTALPAAYSNALHDEFVAVFVNGE 1208
Score = 34.3 bits (75), Expect = 0.52
Identities = 43/214 (20%), Positives = 81/214 (37%), Gaps = 12/214 (5%)
Query: 99 IMKQLAKLLTSFVESTKPCAQMVSIIGHSNMLPVVEFSGFADHLVNPWR---LDPTTLKF 155
++ +L + L S +P A + + G + P+ F L + W L+ +
Sbjct: 227 MLPRLTEKLASLSVHFRPIADLSHVCGRGFVYPIPLHPSFYP-LTSCWEEHGLNASNTIV 285
Query: 156 SLKGNLPYDDELLKPQIGLIRHVLQQPYSRDMMCSMLGLQKQHKQQCIALEDQLVELMIL 215
LPY E + + +L+QP +D L K + + L+ +MI
Sbjct: 286 QPHHTLPYRPEHTSTYLYTLYMILRQPLGKD------SLHPPSKTKTKTNWEMLISVMIC 339
Query: 216 PMEKSEQENDEDEMSPTHWCWLHLSSQVIYLILIGFASFPNIVMGLHNKLVGHDMKKGRD 275
+ E E P + W ++ + VIY I L N + + RD
Sbjct: 340 ESMAEAESLPETEPIPRYQ-WDNIVNIVIYGITQHLLVPKTFFNVLKNLIKRCKYTRARD 398
Query: 276 HLMWVLLQFISGSIQRHPLSNFI-PIIKLHELLY 308
+MW++ Q + L + + I++L+ L+
Sbjct: 399 EVMWIVFQVVGSLSNLTRLDDAVTEIVELYNELF 432
>U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.
Length = 1587
Score = 79.4 bits (187), Expect = 1e-14
Identities = 106/525 (20%), Positives = 214/525 (40%), Gaps = 55/525 (10%)
Query: 573 RVVSEPKSLVSSESEELNRVLVLTLARGIHMAGAGSDGAAVKELLTTIMTNTPHMWSQHT 632
+ S P + + E+ ++ + + R + + D A K + TI+ W + +
Sbjct: 723 KTFSVPDQYPFAINPEIFKMAIYSFLRAVKITA--QDIAIEKTMFPTIINGFG--WPEKS 778
Query: 633 LQCFPPVLVEFFNQISAQKE-NKQLLKKSVEEEYRKWTSMANDNDIISHFSVPGTPLFLC 691
FP ++ N + + V R TS+ + +I + C
Sbjct: 779 TSYFPKWALDAIKASDTSNAVNTEEILSDVRNTARMHTSLTPNQFVIRYGEDRDPATSHC 838
Query: 692 LL-------WKMIFETNRINPIAFKILERIGARALSAHLRKFCDYLVFEVTDPAGGPHIY 744
+L + + T I ++++E+ + + DY++ + +
Sbjct: 839 MLAVLFHFAYNSVDSTYNITSEFYEVMEKKTPKEIVVMGNYLVDYIIADAKTQDCNEKTF 898
Query: 745 KCV-DAINDIIWKYNIVTIDRLVLCLVLRPNPDGNESQVSLYIIQLLLLHGFELRNRVQD 803
K + A +++++ ++ DRL+L L++ P D ++ + + I +L E + R++
Sbjct: 899 KNIAKAAALLVFQFQVLRADRLLLSLIMHPATD-EDALICIQIANEFILTP-EFQERIR- 955
Query: 804 FVKENSPEHWKQNNWYEKHLAFQRKYPEKFTPEEA-------SGAYGAPIPVYLSNVCLR 856
+ +N P K++++ +++ KY + F EA + +P Y + R
Sbjct: 956 WYHQNVP---KKDHFPTEYIKAIVKYHDAFPEFEACELVRSYDSSSNVHMPTYYGCLIER 1012
Query: 857 LIPVFDIVVHRHLEIHQVAKYLEQLLEHLGYLYKFHDRPITFLYNTLHYYEXXXXXXXXX 916
L+P+ D +H LE Q K Q+L+ + LYKFH PI F+Y+ L +
Sbjct: 1013 LLPIMDQYLHVALE-QQGYKLNPQILQSVSMLYKFHAMPIHFMYSVL--FTSHGLMSGPD 1069
Query: 917 XXXXVGAVLGALKDVRPAGWAATETLQNFLANTEYDNTTWVPDLNYYLSLVNRMVDSILF 976
V A +++ TE + F N + + + L++RM S+ F
Sbjct: 1070 AKSFVLAFATQIEECH-----LTEAFEKF--NHQKSSRE-----QLIMELIDRMSASLDF 1117
Query: 977 HKTTKQKYTMMGNSHFPNTDWRFNEYPNPSAHALYVTCVELMSLPVAPNYVGNSLLDVIT 1036
T F DW+ E +P A LY+ C+ELM+ P +P + ++++V+
Sbjct: 1118 ILTPPP---------FVAKDWKIAEL-SPGAQTLYLACIELMASPHSPETLVAAMINVMQ 1167
Query: 1037 KGFVVIPTTKLQLWINAIGLIMAALPDPYWTVLHERLLELTTSSE 1081
+ P + +N L++ ALP Y LH+ + + + E
Sbjct: 1168 ----MKPHARPFNIVNLTALLLTALPAAYSNALHDEFVAVFVNGE 1208
Score = 34.3 bits (75), Expect = 0.52
Identities = 43/214 (20%), Positives = 81/214 (37%), Gaps = 12/214 (5%)
Query: 99 IMKQLAKLLTSFVESTKPCAQMVSIIGHSNMLPVVEFSGFADHLVNPWR---LDPTTLKF 155
++ +L + L S +P A + + G + P+ F L + W L+ +
Sbjct: 227 MLPRLTEKLASLSVHFRPIADLSHVCGRGFVYPIPLHPSFYP-LTSCWEEHGLNASNTIV 285
Query: 156 SLKGNLPYDDELLKPQIGLIRHVLQQPYSRDMMCSMLGLQKQHKQQCIALEDQLVELMIL 215
LPY E + + +L+QP +D L K + + L+ +MI
Sbjct: 286 QPHHTLPYRPEHTSTYLYTLYMILRQPLGKD------SLHPPSKTKTKTNWEMLISVMIC 339
Query: 216 PMEKSEQENDEDEMSPTHWCWLHLSSQVIYLILIGFASFPNIVMGLHNKLVGHDMKKGRD 275
+ E E P + W ++ + VIY I L N + + RD
Sbjct: 340 ESMAEAESLPETEPIPRYQ-WDNIVNIVIYGITQHLLVPKTFFNVLKNLIKRCKYTRARD 398
Query: 276 HLMWVLLQFISGSIQRHPLSNFI-PIIKLHELLY 308
+MW++ Q + L + + I++L+ L+
Sbjct: 399 EVMWIVFQVVGSLSNLTRLDDAVTEIVELYNELF 432
>AF000265-4|AAK68198.1| 457|Caenorhabditis elegans Hypothetical
protein C18E3.6 protein.
Length = 457
Score = 32.3 bits (70), Expect = 2.1
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 731 VFEVTDPAGGPHIYKCVDAINDIIWKYNIVTID 763
V EVTD +IYKC D+I I K N +T+D
Sbjct: 322 VVEVTDKKESIYIYKCNDSIIKIKGKANAITLD 354
>Z71260-1|CAA95798.1| 744|Caenorhabditis elegans Hypothetical
protein F15C11.1 protein.
Length = 744
Score = 31.1 bits (67), Expect = 4.9
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 408 QKPLPNGSTTAPLPTVPLSMCILDSLTLHC-KMSLIHSIVT 447
QK L + ST+ P T+P S+C L + T C + S+ SI T
Sbjct: 152 QKTLASRSTSVPPSTIPSSVCFLSTPTTPCLQFSINESIGT 192
>Z67995-5|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical
protein T01H10.8 protein.
Length = 2692
Score = 31.1 bits (67), Expect = 4.9
Identities = 17/72 (23%), Positives = 37/72 (51%)
Query: 199 KQQCIALEDQLVELMILPMEKSEQENDEDEMSPTHWCWLHLSSQVIYLILIGFASFPNIV 258
+++C+ + L++ + + K E+D+ + S SS++I ++ + +P V
Sbjct: 179 RKECVHSAELLLQCYWMLLSKLALEDDKIDWSIFKPLLRIQSSRIISFMIQFWCKYPTNV 238
Query: 259 MGLHNKLVGHDM 270
GLHN+ H+M
Sbjct: 239 TGLHNRKFYHEM 250
>Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical
protein T01H10.8 protein.
Length = 2692
Score = 31.1 bits (67), Expect = 4.9
Identities = 17/72 (23%), Positives = 37/72 (51%)
Query: 199 KQQCIALEDQLVELMILPMEKSEQENDEDEMSPTHWCWLHLSSQVIYLILIGFASFPNIV 258
+++C+ + L++ + + K E+D+ + S SS++I ++ + +P V
Sbjct: 179 RKECVHSAELLLQCYWMLLSKLALEDDKIDWSIFKPLLRIQSSRIISFMIQFWCKYPTNV 238
Query: 259 MGLHNKLVGHDM 270
GLHN+ H+M
Sbjct: 239 TGLHNRKFYHEM 250
>U60113-1|AAB03334.1| 715|Caenorhabditis elegans SEM-4 short form
protein.
Length = 715
Score = 31.1 bits (67), Expect = 4.9
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 408 QKPLPNGSTTAPLPTVPLSMCILDSLTLHC-KMSLIHSIVT 447
QK L + ST+ P T+P S+C L + T C + S+ SI T
Sbjct: 123 QKTLASRSTSVPPSTIPSSVCFLSTPTTPCLQFSINESIGT 163
>U60112-1|AAB03333.1| 744|Caenorhabditis elegans SEM-4 long form
protein.
Length = 744
Score = 31.1 bits (67), Expect = 4.9
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 408 QKPLPNGSTTAPLPTVPLSMCILDSLTLHC-KMSLIHSIVT 447
QK L + ST+ P T+P S+C L + T C + S+ SI T
Sbjct: 152 QKTLASRSTSVPPSTIPSSVCFLSTPTTPCLQFSINESIGT 192
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.323 0.137 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,692,737
Number of Sequences: 27539
Number of extensions: 1303907
Number of successful extensions: 2844
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2814
Number of HSP's gapped (non-prelim): 29
length of query: 1178
length of database: 12,573,161
effective HSP length: 89
effective length of query: 1089
effective length of database: 10,122,190
effective search space: 11023064910
effective search space used: 11023064910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 65 (30.3 bits)
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