GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000550-TA|BGIBMGA000550-PA|undefined
         (1178 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    26   2.1  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    25   4.8  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    24   8.4  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    24   8.4  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    24   8.4  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    24   8.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   8.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 257 IVMGLHNKLVGH-DMKKGRDHLMWVLLQFISGSIQRHPLSNFIPIIKLHEL 306
           IV+ L   ++ H D +  +D     +L   + SI R   + F+P+  LH L
Sbjct: 338 IVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHTL 388


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 796 ELRNRVQDFVKENSPEHWKQ-NNWYEKHLAFQRKYPEK 832
           E+  +V  F+ EN PE W    N Y+    F+ K+ E+
Sbjct: 85  EVIKKVIKFLVENKPELWDSLANKYDPDKKFRVKFEEE 122


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 23.8 bits (49), Expect = 8.4
 Identities = 8/21 (38%), Positives = 16/21 (76%)

Query: 783 SLYIIQLLLLHGFELRNRVQD 803
           SL+++ L   HG+++R+R+ D
Sbjct: 2   SLFLLLLSTSHGWQIRDRIGD 22


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.8 bits (49), Expect = 8.4
 Identities = 8/21 (38%), Positives = 16/21 (76%)

Query: 783 SLYIIQLLLLHGFELRNRVQD 803
           SL+++ L   HG+++R+R+ D
Sbjct: 7   SLFLLLLSTSHGWQIRDRIGD 27


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 23.8 bits (49), Expect = 8.4
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 303 LHELLYPEKDPLPVPDYS-KAHCTHQMAV 330
           +H L YP   P P+P Y+ +  C+  + V
Sbjct: 35  IHFLQYPGCVPKPIPSYACRGRCSSYLQV 63


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.8 bits (49), Expect = 8.4
 Identities = 8/21 (38%), Positives = 16/21 (76%)

Query: 783 SLYIIQLLLLHGFELRNRVQD 803
           SL+++ L   HG+++R+R+ D
Sbjct: 7   SLFLLLLSTSHGWQIRDRIGD 27


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 8.4
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 416 TTAPLPTVPLSMCILDSLTLHCKMSLIHSIVTHVA--KLAQNKTNIPG 461
           TT P+ ++P S   ++S+T+  +  +I+ + T +     A+  TNI G
Sbjct: 852 TTVPITSLPASSTSINSITV--EKDVINDVKTQITTNTPAKKATNIGG 897


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.137    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 352,241
Number of Sequences: 429
Number of extensions: 16497
Number of successful extensions: 44
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 39
Number of HSP's gapped (non-prelim): 11
length of query: 1178
length of database: 140,377
effective HSP length: 65
effective length of query: 1113
effective length of database: 112,492
effective search space: 125203596
effective search space used: 125203596
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 49 (23.8 bits)