Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000550-TA|BGIBMGA000550-PA|undefined
(1178 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23230.1 68414.m02906 expressed protein 67 8e-11
At5g02660.1 68418.m00202 hypothetical protein contains Pfam prof... 36 0.21
At3g28970.1 68416.m03621 expressed protein contains Pfam domain ... 32 2.0
At3g17170.1 68416.m02190 ribosomal protein S6 family protein (RF... 32 2.0
At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam ... 32 2.6
At1g52320.2 68414.m05905 expressed protein contains Pfam profile... 32 2.6
At1g52320.1 68414.m05904 expressed protein contains Pfam profile... 32 2.6
At3g45040.1 68416.m04852 phosphatidate cytidylyltransferase fami... 31 6.0
>At1g23230.1 68414.m02906 expressed protein
Length = 1615
Score = 66.9 bits (156), Expect = 8e-11
Identities = 105/467 (22%), Positives = 196/467 (41%), Gaps = 53/467 (11%)
Query: 466 SPALVETYSRLLVYTEIESLGIKGFINQLLPNVFKSHAWGILHDLLDMFSYRIHHVQPHY 525
S A+VETY+RLL+ + S+ F N G+ +L++ +YR+ P Y
Sbjct: 730 SIAMVETYTRLLLISP-HSMFRSHFSQLAQRNASLLSKPGVTLLVLEILNYRL---LPLY 785
Query: 526 RVQ-----LLSNIHSLAAYPQANQTQLQL--CFESTALRLITSLGSSGVQLQMSRVVSEP 578
R Q L+ ++ + + + + ++ E+ + LI SL + R P
Sbjct: 786 RYQGKSKTLMYDVTKIISALKGKRGDHRIFRLAENLCMNLILSLRDF---FSVKREGKGP 842
Query: 579 KSLVSSESEELNRVLVLTLARGIHMAGAGSDGAAV--KELLTTIMTNTPHMWSQHTLQCF 636
+E LNR+ ++TLA I G V + +L I+ + H WS+ T++ F
Sbjct: 843 TEF----TETLNRITIMTLAITIKTRGIADPDHMVYLQTMLEQILATSQHTWSEKTMRHF 898
Query: 637 PPVLVEFFN--------QISAQKENKQLLKKSVEEEYRKWTSMANDNDIISHFSVPGTPL 688
P +L E I A ++ + + + A + +SH S P
Sbjct: 899 PSLLRETLKGRVDKRGLSIQAWQQAETTVINQCTQLLSPSAEPAYVSTYLSH-SFPQHRQ 957
Query: 689 FLCLLWKMIFE--TNRINPIAF-KILERIGARALSAHLRKFCDYLVFEV-TDPAGGPHIY 744
+LC ++ + IN ++L + ++A++ D L+ V D G +
Sbjct: 958 YLCAGACLLMQGHAENINSTNLARVLREVSPEEVTANIYTLVDVLLHHVHVDLQQGQSLE 1017
Query: 745 KCVDAIND----IIWKYNIVTIDRLVLCLVLRPNPDGNESQVSLYIIQLLLLHGFELRNR 800
+D W + ++ +D +L L+ D ++ +L II + LL +L R
Sbjct: 1018 AVLDKAGANLAFFFWTHEMLPLDIFLLALI-----DRDDDPHAL-IIAMSLLKTPDLLLR 1071
Query: 801 VQDFVKEN-SPEHWKQNNWYEKHLAFQRKYPEKFTPEEASGAYGAPIPVYLSNVCLRLIP 859
++++ + SPEHW F+R +K S + P + ++ RL+P
Sbjct: 1072 IKNYCQNRGSPEHWLVTQ------VFKRNELQKALGNHLS--WKDRYPTFFDDIAARLLP 1123
Query: 860 VFDIVVHRHLEIHQVAKYLEQLLEHLGYLYKFHDRPITFLYNTLHYY 906
V +V++R +E + + + LL H +L +H TF+ + L Y+
Sbjct: 1124 VIPLVLYRLIENNAMEQADNLLLAHSHFL-AYHPLRFTFVRDILAYF 1169
>At5g02660.1 68418.m00202 hypothetical protein contains Pfam
profiles PF04780: Protein of unknown function (DUF629),
PF04781: Protein of unknown function (DUF627)
Length = 629
Score = 35.5 bits (78), Expect = 0.21
Identities = 23/69 (33%), Positives = 34/69 (49%)
Query: 526 RVQLLSNIHSLAAYPQANQTQLQLCFESTALRLITSLGSSGVQLQMSRVVSEPKSLVSSE 585
R QLL I SL ++ E L+ LG S +L+ R++ P+S+ E
Sbjct: 309 RSQLLKEIRSLLVTFIQHKVLSDSFRERVVYSLVLKLGISKQKLKDCRLLETPQSICFLE 368
Query: 586 SEELNRVLV 594
+ELNR+LV
Sbjct: 369 CDELNRILV 377
>At3g28970.1 68416.m03621 expressed protein contains Pfam domain
PF03556: Domain of unknown function (DUF298)
Length = 295
Score = 32.3 bits (70), Expect = 2.0
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 5/114 (4%)
Query: 788 QLLLLHGFELRNRVQDFVKENSPEHWKQNNWYEKHLAFQRKYPEKFTPEEASGAYGAPIP 847
+L+L F L NR DF+++N + ++ W ++ LAF R E ++ GA+ I
Sbjct: 115 KLVLAGRFRLLNRWCDFIEKNQRHNISEDTW-QQVLAFSRCVHENLEGYDSEGAWPVLID 173
Query: 848 VYLSNVCLRLIPVFDIVVHRHLEIHQVAKYLEQLLEHLGYLYKFHDRPITFLYN 901
++ ++ L P D + + L Q EH +K + RP T L N
Sbjct: 174 DFVEHMYSILGPNKDTSLFCKCGDTESESCLYQEDEH----HKDYRRPHTGLRN 223
>At3g17170.1 68416.m02190 ribosomal protein S6 family protein (RFC3)
annotation temporarily based on supporting cDNA
gi|15620809|dbj|AB057424.1|; contains TIGRfam TIGR00166
and Pfam PF01250 profiles ribosomal protein S6.
Length = 314
Score = 32.3 bits (70), Expect = 2.0
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 745 KCVDAINDIIWKYNIVTIDRLVLCLVLRPNPDGNESQVSLYIIQLLL--LHGFELRN--- 799
K +D D++ ++ L L L+ D NE ++ Y + L+ H E+ +
Sbjct: 83 KKIDEEGDLLPEFADAEEKELYQFLDLQLQSDLNEERMRHYEVVYLIHEKHAEEVESINQ 142
Query: 800 RVQDFVKENSPEHWKQNNWYEKHLAFQ 826
+VQD++KE + W+ ++W + LA++
Sbjct: 143 KVQDYLKEKKGKVWRFSDWGMRRLAYK 169
>At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam
profile: PF03399 SAC3/GANP family
Length = 1720
Score = 31.9 bits (69), Expect = 2.6
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 655 QLLKKSVEEEYRKWTSMANDNDIISHFSVPGTPLFLCLLWKMIF--ETNRIN--PIAFKI 710
Q +++ EE + W+ + N +D+I+ V P C+ WK++ +T +N A ++
Sbjct: 1133 QAMRRRFEEREKSWSRL-NISDVIADILVGRNPESKCISWKVVLCTQTKSVNSSSSASQV 1191
Query: 711 LERIGARALSAHLRKFCDY 729
+R LS+ L ++
Sbjct: 1192 THSAASRWLSSKLMPHAEH 1210
>At1g52320.2 68414.m05905 expressed protein contains Pfam profile:
PF04782 protein of unknown function (DUF632)
Length = 398
Score = 31.9 bits (69), Expect = 2.6
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 797 LRNRVQDFVKENSPEHWKQNNWYEKHLAFQRKYPEKFTPEEASGAYGAPIPVYLSNV 853
LRN+ ++ KE + + +WY K++ Q++ PE P+EA + + V NV
Sbjct: 268 LRNKCEETRKELGRKIRQFEDWYHKYI--QKRGPEGMNPDEADNDHNDEVAVRQFNV 322
>At1g52320.1 68414.m05904 expressed protein contains Pfam profile:
PF04782 protein of unknown function (DUF632)
Length = 398
Score = 31.9 bits (69), Expect = 2.6
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 797 LRNRVQDFVKENSPEHWKQNNWYEKHLAFQRKYPEKFTPEEASGAYGAPIPVYLSNV 853
LRN+ ++ KE + + +WY K++ Q++ PE P+EA + + V NV
Sbjct: 268 LRNKCEETRKELGRKIRQFEDWYHKYI--QKRGPEGMNPDEADNDHNDEVAVRQFNV 322
>At3g45040.1 68416.m04852 phosphatidate cytidylyltransferase family
protein weak similarity to SP|P20048 Dolichol kinase (EC
2.7.1.108) {Saccharomyces cerevisiae}; contains Pfam
profile: PF01148 phosphatidate cytidylyltransferase
Length = 569
Score = 30.7 bits (66), Expect = 6.0
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 1101 SDAMLENKYSLTLACAHAIWYHAGAGQIMQVPIYHIKYMFVGDTLKNEVENVIRKLR 1157
S+ ++ + +SL L CA IW +G P I + +GDT+ + V + LR
Sbjct: 437 SEHLIVSHFSLLLGCALPIWMSSGFNDRALSPFAGILSLGIGDTMASMVGHKYGVLR 493
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.323 0.137 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,039,074
Number of Sequences: 28952
Number of extensions: 1212316
Number of successful extensions: 2590
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2584
Number of HSP's gapped (non-prelim): 11
length of query: 1178
length of database: 12,070,560
effective HSP length: 89
effective length of query: 1089
effective length of database: 9,493,832
effective search space: 10338783048
effective search space used: 10338783048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 65 (30.3 bits)
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