Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000549-TA|BGIBMGA000549-PA|IPR008758|Peptidase S28
         (439 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory pro...    23   4.3  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   4.3  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   5.6  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   5.6  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   5.6  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    23   5.6  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   7.5  

>DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory
           protein 19 protein.
          Length = 119

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 208 LASQNDMKNFYNSIADDFADLVQYNEDNRISAD 240
           LAS+  +KN++N I D  A     +E  R+  D
Sbjct: 32  LASERLLKNYFNCIMDRGACTPDADELKRVLPD 64


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 4/67 (5%)

Query: 162 VDALREKTGDDK-CVNELRQAHNEISQLIQHSPEV---IEKEFRVCKPFGLASQNDMKNF 217
           +DA+  K   D  CV++LR A      +++  P+V   +   F   KP  +   N    F
Sbjct: 456 LDAICNKPRKDAVCVSQLRNAKKVDEAILEERPDVKIFLPFRFLFYKPEDIFRPNTYNRF 515

Query: 218 YNSIADD 224
             +   D
Sbjct: 516 LAATGGD 522


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 4/35 (11%)

Query: 338 IQQCQDVFG----QKYNLNFVSNSAAWTNNYYGAL 368
           IQQ Q  +G    Q YN N +SN   + N Y+  L
Sbjct: 55  IQQQQLQYGYHNHQNYNSNVLSNGYGYGNYYHPQL 89


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 4/35 (11%)

Query: 338 IQQCQDVFG----QKYNLNFVSNSAAWTNNYYGAL 368
           IQQ Q  +G    Q YN N +SN   + N Y+  L
Sbjct: 55  IQQQQLQYGYHNHQNYNSNVLSNGYGYGNYYHPQL 89


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 4/35 (11%)

Query: 338 IQQCQDVFG----QKYNLNFVSNSAAWTNNYYGAL 368
           IQQ Q  +G    Q YN N +SN   + N Y+  L
Sbjct: 55  IQQQQLQYGYHNHQNYNSNVLSNGYGYGNYYHPQL 89


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 4/35 (11%)

Query: 338 IQQCQDVFG----QKYNLNFVSNSAAWTNNYYGAL 368
           IQQ Q  +G    Q YN N +SN   + N Y+  L
Sbjct: 55  IQQQQLQYGYHNHQNYNSNVLSNGYGYGNYYHPQL 89


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 22.2 bits (45), Expect = 7.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)

Query: 211 QNDMKNFYNSIADDFADLVQYNEDN 235
           +++M +FY    DDFA  ++ + +N
Sbjct: 81  ESNMISFYLEATDDFAYFLEVSNNN 105


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.134    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,275
Number of Sequences: 317
Number of extensions: 4681
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 7
length of query: 439
length of database: 114,650
effective HSP length: 59
effective length of query: 380
effective length of database: 95,947
effective search space: 36459860
effective search space used: 36459860
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)