Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000549-TA|BGIBMGA000549-PA|IPR008758|Peptidase S28
         (439 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   6.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   6.7  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 191 HSPEVIEKEFRVCKPFGLASQNDMKNFYNSIADDFA 226
           H+P+  E  F+V  P   +    ++N  N  AD+ A
Sbjct: 344 HAPKQTEVRFKVHDPKAHSKGGTLENTINGRADEEA 379


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 191 HSPEVIEKEFRVCKPFGLASQNDMKNFYNSIADDFA 226
           H+P+  E  F+V  P   +    ++N  N  AD+ A
Sbjct: 344 HAPKQTEVRFKVHDPKAHSKGGTLENTINGRADEEA 379


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,519
Number of Sequences: 429
Number of extensions: 6384
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 2
length of query: 439
length of database: 140,377
effective HSP length: 60
effective length of query: 379
effective length of database: 114,637
effective search space: 43447423
effective search space used: 43447423
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)