Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000549-TA|BGIBMGA000549-PA|IPR008758|Peptidase S28
(439 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 31 0.42
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 30 0.56
SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces... 28 3.0
SPCC4B3.06c |||NADPH-dependent FMN reductase |Schizosaccharomyce... 27 3.9
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 27 5.2
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom... 27 5.2
SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 6.9
SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces pombe... 27 6.9
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 26 9.1
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 30.7 bits (66), Expect = 0.42
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 48 QWFKQKLDHSNPSDLRTWKQVCIYQFIDKRDLSIKNL--QFLSSY--QALADLANFISSM 103
Q ++ + H + + + Q ++ DLS K L F +++ LA+ +N ++ +
Sbjct: 825 QLYQNDVPHEKIENALRKVAMIVSQVVNDEDLSNKELLYDFFNNHILGILAEFSNILNDL 884
Query: 104 KQKFRLNEKVKWI 116
K K +NEK+K I
Sbjct: 885 KGKTSINEKIKTI 897
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 30.3 bits (65), Expect = 0.56
Identities = 21/100 (21%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 210 SQNDMKNFYNSIADDFADLVQYNEDNRISADVNYKNLTINTVCDMLTATGGLPAYKKLAA 269
S ++ NF ++D +V+ N+++ DVN+ + + + T G + +K+
Sbjct: 528 SSAELPNFDYLVSDQVHKIVEINDEHADCDDVNFSTASFE-IYERSIPTHGADSERKILK 586
Query: 270 FNDIVLAKSNETCMDYSYDNMISDLRNITWSSNGARQWMY 309
D +L + +E D + D I + + SS+ ++ Y
Sbjct: 587 -RDSLLNEDDEIFNDLNSDKTIKTNQATSTSSSNTQEISY 625
>SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 27.9 bits (59), Expect = 3.0
Identities = 28/139 (20%), Positives = 58/139 (41%), Gaps = 8/139 (5%)
Query: 71 YQFIDKRDLS--IKNLQFLSSYQALADLANFISSMKQKFRLNEKVKWIAFGG------SY 122
+Q ++K LS + + FL L D ++ +++ +L ++ + G +
Sbjct: 76 HQEVEKPTLSATVGRVSFLKKMPKLEDEEEILAKKREEQKLRKRSRQNDDGSDDDEVENL 135
Query: 123 PGSLAAWLRLKYPHLIHASISTSGPLLAKVDFKEYYQVVVDALREKTGDDKCVNELRQAH 182
L L+ HL+H + S +G + + K ++VV + + G + A
Sbjct: 136 KNDLELQKLLRESHLLHEATSRTGQVQLVAEGKIRHKVVQQHIAQLGGKKETEKMPMAAR 195
Query: 183 NEISQLIQHSPEVIEKEFR 201
+ + +H +VIE E R
Sbjct: 196 RGMKKKQKHIEKVIENEAR 214
>SPCC4B3.06c |||NADPH-dependent FMN reductase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 200
Score = 27.5 bits (58), Expect = 3.9
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 116 IAFGGSYPGSLAAWLRLKYPHLIHASISTSGPLLAKVDFKEYYQVVVDALREKTGDDKCV 175
+++GG G A+ L+ + ++ + P L + + Q VVD E T K +
Sbjct: 124 VSYGGHGGGDCASQLK-HVAGFLKMRVAPTMPALT-LPRDKIVQGVVDPAVEFT---KHL 178
Query: 176 NELRQAHNEISQLIQHSPE 194
EL++A E SQL + +PE
Sbjct: 179 GELKKAFGEFSQLFESNPE 197
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 27.1 bits (57), Expect = 5.2
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 68 VCIYQFIDKRDLSIKNLQFLSSYQALADL-ANF 99
V + + I K DLS+ L+FL S L DL ANF
Sbjct: 832 VTLSRLITKPDLSVHILEFLCSLARLPDLIANF 864
>SPCC1235.10c |sec6||exocyst complex subunit
Sec6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 730
Score = 27.1 bits (57), Expect = 5.2
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 160 VVVDALREKTGDDKCVNELRQAHNEISQLIQHSPEVI-EKEFRVCKPFGLASQNDMKNFY 218
V+ D LRE D + L +AH ++S+L + E + + + +N N
Sbjct: 104 VIEDMLREDLELDSDMPNLLRAHYKLSKLREFREEALYQASLEGQSDLPITLENSFSNL- 162
Query: 219 NSIADDFADLV 229
N+++D+F LV
Sbjct: 163 NTLSDNFDRLV 173
>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 289
Score = 26.6 bits (56), Expect = 6.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 304 ARQWMYQTCTEFGFYQTSS 322
AR WM+ C+ +G Y TS+
Sbjct: 233 ARYWMHLICSYYGIYTTST 251
>SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 305
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 191 HSPEVIEKEFRVCKPFGLASQNDMKNFY 218
H P+V+E+ +RV KP G+ S + Y
Sbjct: 199 HIPKVLEQAYRVLKPGGVFSCLEFSKVY 226
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 26.2 bits (55), Expect = 9.1
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 125 SLAAWLRLKYPHLIHASISTSGPLLAKVDFKEYYQVVVDA 164
+L+ R K P ++IS + P+LAK+ + E +++VDA
Sbjct: 229 TLSNLCRGKNPPPNWSTISVAVPILAKLLYSEDVEIIVDA 268
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.134 0.411
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,087,176
Number of Sequences: 5004
Number of extensions: 87722
Number of successful extensions: 200
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 192
Number of HSP's gapped (non-prelim): 12
length of query: 439
length of database: 2,362,478
effective HSP length: 75
effective length of query: 364
effective length of database: 1,987,178
effective search space: 723332792
effective search space used: 723332792
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)
- SilkBase 1999-2023 -