Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000549-TA|BGIBMGA000549-PA|IPR008758|Peptidase S28
(439 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52858| Best HMM Match : No HMM Matches (HMM E-Value=.) 186 3e-47
SB_817| Best HMM Match : Peptidase_S28 (HMM E-Value=0) 145 7e-35
SB_13139| Best HMM Match : Peptidase_S28 (HMM E-Value=0) 118 9e-27
SB_51847| Best HMM Match : Peptidase_S28 (HMM E-Value=2.7e-33) 86 6e-17
SB_19968| Best HMM Match : TPR_2 (HMM E-Value=1.1e-39) 31 1.9
SB_55799| Best HMM Match : Na_trans_assoc (HMM E-Value=1.5) 30 4.3
SB_18521| Best HMM Match : ig (HMM E-Value=7.5e-11) 30 4.3
SB_48794| Best HMM Match : Transposase_5 (HMM E-Value=2.3) 29 5.6
SB_40943| Best HMM Match : Exo_endo_phos (HMM E-Value=9.2e-07) 29 5.6
SB_29852| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_27969| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_23032| Best HMM Match : RVT_1 (HMM E-Value=1.1e-23) 29 5.6
SB_58157| Best HMM Match : RVT_1 (HMM E-Value=1.6e-36) 29 5.6
SB_57293| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_32853| Best HMM Match : RVT_1 (HMM E-Value=1.6) 29 5.6
SB_21866| Best HMM Match : UCH (HMM E-Value=0) 29 5.6
SB_19613| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_26467| Best HMM Match : PKD (HMM E-Value=1.1e-06) 29 7.5
SB_40791| Best HMM Match : G2F (HMM E-Value=0.9) 29 7.5
>SB_52858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 186 bits (453), Expect = 3e-47
Identities = 86/176 (48%), Positives = 114/176 (64%), Gaps = 3/176 (1%)
Query: 266 KLAAFNDIVLAKSNETCMDYSYDNMISDLRNITWSSN---GARQWMYQTCTEFGFYQTSS 322
+ A N ++L E C+D SY N I+ LRN++W S+ G RQW YQTCTEFGFYQT+
Sbjct: 2 RYAKLNSLILDTYGEKCLDASYQNAINSLRNVSWDSSAAEGGRQWTYQTCTEFGFYQTTD 61
Query: 323 AEMXXXXXXXXXXXXIQQCQDVFGQKYNLNFVSNSAAWTNNYYGALKIAVGRIVFVHGSI 382
++ IQQC DVFG+ +N + +++ TN YG IA RIVF +GSI
Sbjct: 62 SDNQPFGKRFPLKYSIQQCMDVFGEAFNSSNLASGIRQTNTNYGGKGIASSRIVFPNGSI 121
Query: 383 DPWHALGITETKDNDSPAIFIHGTAHCANMYPASDNDLAELKQARIEIEKYLSKWL 438
DPWHALGI + + A+FI GTAHCANMYP SD+D +LKQAR I+++++KWL
Sbjct: 122 DPWHALGIIKDISDTEQAVFIQGTAHCANMYPESDSDSPQLKQAREVIKQHIAKWL 177
>SB_817| Best HMM Match : Peptidase_S28 (HMM E-Value=0)
Length = 826
Score = 145 bits (351), Expect = 7e-35
Identities = 77/168 (45%), Positives = 109/168 (64%), Gaps = 10/168 (5%)
Query: 76 KRDLSIKNLQFLSSYQALADLANFISSMKQKFRLNEKVKWIAFGGSYPGSLAAWLRLKYP 135
+ D+S NL++L+S QALADLA F +M KF L + KWI+FGGSYPGSL+AWLRLKYP
Sbjct: 164 RSDMSDANLKYLNSEQALADLAAFRQAMSVKFNLTDS-KWISFGGSYPGSLSAWLRLKYP 222
Query: 136 HLIH-----ASISTSGPLLAKVDFKEYYQVVVDALREKTGDDKCVNELRQAHNEISQLI- 189
HLIH ++++S P+LA+++F EY +VV +L E TG D C + A I +L+
Sbjct: 223 HLIHGTTFKGAVASSAPVLAQLNFPEYLEVVTASL-ETTGPD-CTKNIANATAAIEELLD 280
Query: 190 -QHSPEVIEKEFRVCKPFGLASQNDMKNFYNSIADDFADLVQYNEDNR 236
+ + FRVC+P + ND+ F +++A F +VQYN+DNR
Sbjct: 281 ADEGTKKLTNLFRVCEPLNRRNDNDVSTFSSNLAGLFMGVVQYNKDNR 328
Score = 47.2 bits (107), Expect = 3e-05
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 10 LYVALISVDGVKKFHLGRSNGGNLGIPGGDYQSNLPPPQWFKQKLDHSNPSDLRTWKQVC 69
L+ A + V+ +LGR GG L P + PP WF Q+LDH + S+ TWKQ
Sbjct: 47 LFTAFYEGEAVR-LYLGRPKGGMLQAPKIPLGFSAPPENWFIQRLDHFDDSNTETWKQRF 105
Query: 70 IY 71
Y
Sbjct: 106 YY 107
>SB_13139| Best HMM Match : Peptidase_S28 (HMM E-Value=0)
Length = 563
Score = 118 bits (284), Expect = 9e-27
Identities = 61/155 (39%), Positives = 95/155 (61%), Gaps = 17/155 (10%)
Query: 79 LSIKNLQFLSSYQALADLANFISSMKQKFRLNEKVKWIAFGGSYPGSLAAWLRLKYPHLI 138
L KN+++LSS ALADLA F++ K KF L +K KWI +GGSYPGSL+AW R+KYPHL+
Sbjct: 198 LKTKNMRYLSSQLALADLAQFVAHAKNKFGLTDKNKWITYGGSYPGSLSAWFRIKYPHLV 257
Query: 139 HASISTSGPLLAKVDFKEYYQVVVDALREKTGDDKCVNELRQAHNEISQLIQ-HSPEVIE 197
++++S P+ A+ DFK+Y + C++ + +A + +L+ + + +E
Sbjct: 258 IGAVASSAPVEAQTDFKDY--------------NNCMHNIEEAFKFVDRLLDTKNFKTLE 303
Query: 198 KEFRVCKPFGLASQNDMKNFYNSIADDFADLVQYN 232
K+F C ++ ND F +++A F LVQYN
Sbjct: 304 KDFIACN--DISKLNDTWMFASNLAGFFMGLVQYN 336
Score = 104 bits (249), Expect = 2e-22
Identities = 54/151 (35%), Positives = 80/151 (52%), Gaps = 6/151 (3%)
Query: 281 TCMDYSYDNMISDLRNITWSSNG---ARQWMYQTCTEFGFYQTSSAEMX-XXXXXXXXXX 336
+C D+SY+N + ++ +G RQW YQ+CT+FG++QT
Sbjct: 414 SCSDFSYENFMKTVKTQKRDPDGFDMIRQWYYQSCTQFGYFQTCEPGTHCVFSKRLGIIN 473
Query: 337 XIQQCQDVFGQKYNLNFVSNSAAWTNNYYGALKIAVGRIVFVHGSIDPWHALGITETKDN 396
+ CQ+VF + L + +TN YYG + +IVFV+GSIDPWH+L + + +
Sbjct: 474 DMDLCQEVF--EIALGQLKARINFTNEYYGGKRPRGSKIVFVNGSIDPWHSLSVVTNQTS 531
Query: 397 DSPAIFIHGTAHCANMYPASDNDLAELKQAR 427
A+FI GT+HCANM ND L +AR
Sbjct: 532 SEVAVFIPGTSHCANMGANQPNDPPALVEAR 562
>SB_51847| Best HMM Match : Peptidase_S28 (HMM E-Value=2.7e-33)
Length = 1224
Score = 85.8 bits (203), Expect = 6e-17
Identities = 49/136 (36%), Positives = 80/136 (58%), Gaps = 7/136 (5%)
Query: 81 IKNLQFLSSYQALADLANFISSMKQKFRLNEKVKWIAFGGSYPGSLAAWLRLKYPHLIHA 140
I+N+ +LS QALAD A I ++K++F+ EK ++FGGSY G L+A+LR KYP++I A
Sbjct: 113 IENIGYLSIEQALADFATLIPALKKQFKAEEKPV-VSFGGSYGGMLSAYLRFKYPNVIQA 171
Query: 141 SISTSGPL--LAKVDFKEYYQVVVDALREKTGDDKCVNELRQAHNEISQLIQH---SPEV 195
+++ S P+ +A + ++++ V K D KC + +R E+ L + +
Sbjct: 172 ALAASAPIYFIADLSIRDFFFPAV-TRDFKNADPKCPDLVRAGFIELDNLKKEGLKGLDA 230
Query: 196 IEKEFRVCKPFGLASQ 211
I K F++CKP A Q
Sbjct: 231 ISKAFKLCKPLKSADQ 246
>SB_19968| Best HMM Match : TPR_2 (HMM E-Value=1.1e-39)
Length = 604
Score = 31.1 bits (67), Expect = 1.9
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 210 SQNDMKNFYNSIADDFADLVQYNEDNRISADVNYKNLTINTVCDMLTATGGLPAYKKLAA 269
+Q D N YN++A ++ +Y E+ + T+ V L GGL Y K
Sbjct: 185 NQKDQVNTYNNMASFHGEMCKYEEEKKCIRQAISLTATLENVPPNLGVRGGL--YTKSGD 242
Query: 270 FND 272
FN+
Sbjct: 243 FNE 245
>SB_55799| Best HMM Match : Na_trans_assoc (HMM E-Value=1.5)
Length = 577
Score = 29.9 bits (64), Expect = 4.3
Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 75 DKRDLSIKNLQFLSSYQALADLANFISSMKQKFRLNEKVKWIAFGGSYPGSLAAWLRLKY 134
D+++ IK++ + +A + MK+K + V + Y +L + +
Sbjct: 275 DEQERMIKSIHPTVQTRMNTAVARIKTIMKEKNNTADGVLYTELLDGYNSALEKAINIGV 334
Query: 135 PHLIHASISTSGPLLAKVDFKEYYQVVVDALREKTGDDKCVNELRQAHNEISQLIQHSPE 194
P L A + G V ++ + V+D R+++ + + + + S+L++ PE
Sbjct: 335 PALTLAFPAAKG-FYKLVKKRQASRKVIDLTRQRSISESEELSVSSSFDSESELLESQPE 393
Query: 195 VIEKEF 200
+++ EF
Sbjct: 394 LLDSEF 399
>SB_18521| Best HMM Match : ig (HMM E-Value=7.5e-11)
Length = 1033
Score = 29.9 bits (64), Expect = 4.3
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 296 NITWSSNGARQWMYQTCTEFGFYQTSSAEM 325
N+TW+S ++W + C +Y+ SS+E+
Sbjct: 571 NVTWNSFPKQEWNHPDCKLLAWYKPSSSEV 600
>SB_48794| Best HMM Match : Transposase_5 (HMM E-Value=2.3)
Length = 280
Score = 29.5 bits (63), Expect = 5.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 209 ASQNDMKNFYNSIADDFADLVQYNEDNRISAD 240
A +NDMKNFYNS+ + + + +SAD
Sbjct: 235 ADRNDMKNFYNSLNEIYGPTTSGSLSPLLSAD 266
>SB_40943| Best HMM Match : Exo_endo_phos (HMM E-Value=9.2e-07)
Length = 550
Score = 29.5 bits (63), Expect = 5.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 209 ASQNDMKNFYNSIADDFADLVQYNEDNRISAD 240
A +NDMKNFYNS+ + + + +SAD
Sbjct: 416 ADRNDMKNFYNSLNEIYGPTTSGSLSPLLSAD 447
>SB_29852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 836
Score = 29.5 bits (63), Expect = 5.6
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 71 YQFIDKRDLSIKNLQFLSSYQALADLANFISSMKQKFRLNEKVK 114
YQF+ DL I N+ L S + +++N + S + RLN + K
Sbjct: 389 YQFLTSGDLKISNVTSLDSGRYTCEVSNRLGSASRTGRLNVQDK 432
>SB_27969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 29.5 bits (63), Expect = 5.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 209 ASQNDMKNFYNSIADDFADLVQYNEDNRISAD 240
A +NDMKNFYNS+ + + + +SAD
Sbjct: 78 ADRNDMKNFYNSLNEIYGPTTSGSLSPLLSAD 109
>SB_23032| Best HMM Match : RVT_1 (HMM E-Value=1.1e-23)
Length = 855
Score = 29.5 bits (63), Expect = 5.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 209 ASQNDMKNFYNSIADDFADLVQYNEDNRISAD 240
A +NDMKNFYNS+ + + + +SAD
Sbjct: 177 ADRNDMKNFYNSLNEIYGPTTSGSLSPLLSAD 208
>SB_58157| Best HMM Match : RVT_1 (HMM E-Value=1.6e-36)
Length = 1092
Score = 29.5 bits (63), Expect = 5.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 209 ASQNDMKNFYNSIADDFADLVQYNEDNRISAD 240
A +NDMKNFYNS+ + + + +SAD
Sbjct: 434 ADRNDMKNFYNSLNEIYGPTTSGSLSPLLSAD 465
>SB_57293| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1395
Score = 29.5 bits (63), Expect = 5.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 209 ASQNDMKNFYNSIADDFADLVQYNEDNRISAD 240
A +NDMKNFYNS+ + + + +SAD
Sbjct: 474 ADRNDMKNFYNSLNEIYGPTTSGSLSPLLSAD 505
>SB_32853| Best HMM Match : RVT_1 (HMM E-Value=1.6)
Length = 358
Score = 29.5 bits (63), Expect = 5.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 209 ASQNDMKNFYNSIADDFADLVQYNEDNRISAD 240
A +NDMKNFYNS+ + + + +SAD
Sbjct: 17 ADRNDMKNFYNSLNEIYGPTTSGSLSPLLSAD 48
>SB_21866| Best HMM Match : UCH (HMM E-Value=0)
Length = 2165
Score = 29.5 bits (63), Expect = 5.6
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 166 REKTGDDKC--VNELRQ-----AHNEISQLIQHSPEVIEKEFRVC-KPFGLASQNDMKNF 217
R+K + K VN LRQ H SQL H P+ K F+ +P L Q+D F
Sbjct: 1333 RDKAQEQKNYQVNVLRQIQYIFGHLSQSQLQFHIPKGFWKTFKFLGEPVNLREQHDALEF 1392
Query: 218 YNSIADD 224
+N++ D+
Sbjct: 1393 FNNLLDN 1399
>SB_19613| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 29.5 bits (63), Expect = 5.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 209 ASQNDMKNFYNSIADDFADLVQYNEDNRISAD 240
A +NDMKNFYNS+ + + + +SAD
Sbjct: 205 ADRNDMKNFYNSLNEIYGPTTSGSLSPLLSAD 236
>SB_26467| Best HMM Match : PKD (HMM E-Value=1.1e-06)
Length = 1826
Score = 29.1 bits (62), Expect = 7.5
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 285 YSYDNMISDLRNITWSSNGA-----RQWMY-QTCTEFGFYQTSSAEM 325
YS + + D +N+TW +NG R+W Y + C+ FY S +
Sbjct: 1553 YSSNCLFFDEKNMTWVNNGCEVNIEREWHYSEICSPIMFYPHQSVSL 1599
>SB_40791| Best HMM Match : G2F (HMM E-Value=0.9)
Length = 535
Score = 29.1 bits (62), Expect = 7.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 42 SNLPPPQWFKQKLDHSNPSDLRTWKQVCIYQFI 74
+NL W KQK H P+ +RT + +Y +I
Sbjct: 441 ANLGCYPWSKQKFRHEGPTHIRTSVHIRVYAYI 473
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.319 0.134 0.411
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,693,086
Number of Sequences: 59808
Number of extensions: 593725
Number of successful extensions: 1403
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1376
Number of HSP's gapped (non-prelim): 23
length of query: 439
length of database: 16,821,457
effective HSP length: 84
effective length of query: 355
effective length of database: 11,797,585
effective search space: 4188142675
effective search space used: 4188142675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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