Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000548-TA|BGIBMGA000548-PA|IPR006968|Protein of unknown
function DUF647
         (422 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    28   0.11 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    28   0.11 
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    24   2.3  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 28.3 bits (60), Expect = 0.11
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 365  TYGVVETKPLMHYKKEASKRRVHDIG-TETESPEIEEYRE 403
            T G  E KP+  Y  EA +RRV  IG T + +P I  +R+
Sbjct: 1378 TSGGGENKPIF-YLDEAFQRRVTQIGSTSSNNPSISAFRK 1416


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 28.3 bits (60), Expect = 0.11
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 365  TYGVVETKPLMHYKKEASKRRVHDIG-TETESPEIEEYRE 403
            T G  E KP+  Y  EA +RRV  IG T + +P I  +R+
Sbjct: 1378 TSGGGENKPIF-YLDEAFQRRVTQIGSTSSNNPSISAFRK 1416


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 127 PYFKNYTTVVLCVSTVMKAI 146
           PY K+YT + L VS +M  I
Sbjct: 46  PYLKSYTYIKLVVSVLMDFI 65


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.136    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,774
Number of Sequences: 317
Number of extensions: 4195
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 7
length of query: 422
length of database: 114,650
effective HSP length: 59
effective length of query: 363
effective length of database: 95,947
effective search space: 34828761
effective search space used: 34828761
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)