Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000548-TA|BGIBMGA000548-PA|IPR006968|Protein of unknown
function DUF647
         (422 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    32   0.008
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    27   0.40 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   2.1  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   8.5  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 32.3 bits (70), Expect = 0.008
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 4/92 (4%)

Query: 56  TQEVLRGVGVGDTTATPLAATVTWVIKDGCGHLGRILFAFTHGTCLDAYSKKWRLYAD-- 113
           T  V + V  G  +        T V KDG   +G I+F  T G     +  + +L  D  
Sbjct: 209 TTYVTKEVATGTASEITQIQEATLVYKDGTNVMGMIVFCITFGLVAGQFGAQGKLIVDFF 268

Query: 114 -ILNDAAM-CIEIALPYFKNYTTVVLCVSTVM 143
            ILN+  M  + I + ++  +  + L    +M
Sbjct: 269 MILNEIIMKLVGIIIMWYSPFGIMCLIAGKIM 300


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 26.6 bits (56), Expect = 0.40
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 166 KDLIKKKYPKASHLKNIKDVYENRNYIIIPNVQDRKMYVLLNEKAMNDDIL 216
           KDLI  K   A  +K+I + Y+N   + +     R  ++LLN+  +  DIL
Sbjct: 47  KDLILVKKSTAHFVKDIYEKYKNEPMVGL--YATRSPFLLLNDPELIKDIL 95


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 242 APNEERPFAQVCRTIQTTDWSREPIETHVFNEFKFEPSYDLMKYVNRIVQREWMRIKT 299
           +P  E+P     R I+ T      I  H  N+ KFE   +  KYV  ++ R ++ I T
Sbjct: 501 SPTFEKPLV---REIEKTIDDARFIAQHAKNKDKFESVEEDWKYVAMVLDRIFLWIFT 555


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 7/58 (12%)

Query: 244 NEERPFAQVCRTIQTTDW-------SREPIETHVFNEFKFEPSYDLMKYVNRIVQREW 294
           +E+R    VCR + TT W       + +     +    +    YDL++ VN   +  W
Sbjct: 76  SEKRIPLYVCRVLHTTVWVAGAQRGNEQRCTVTMHGTVQSYDKYDLLENVNNAARINW 133


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,631
Number of Sequences: 429
Number of extensions: 5818
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 4
length of query: 422
length of database: 140,377
effective HSP length: 59
effective length of query: 363
effective length of database: 115,066
effective search space: 41768958
effective search space used: 41768958
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)