GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000548-TA|BGIBMGA000548-PA|IPR006968|Protein of unknown
function DUF647
         (422 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    28   2.8  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    27   6.6  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    26   8.7  

>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 3/59 (5%)

Query: 161 MGVSIKDLIKKKYPKAS-HLKNIKDVYENRNYIIIPNVQDRKMYV--LLNEKAMNDDIL 216
           M  S  D +K++  + S HLK++++ YE+   +    + DR+ Y+  L N+ + N+++L
Sbjct: 359 MAASRYDTVKREKERLSEHLKSLQEQYEHIQSVYKNVLLDRESYIMRLGNKISENNELL 417


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 12/43 (27%), Positives = 23/43 (53%)

Query: 109 RLYADILNDAAMCIEIALPYFKNYTTVVLCVSTVMKAIVGVSD 151
           R+  DIL   + CI+ A+   K   +VV+ + +++     +SD
Sbjct: 284 RVNQDILKTKSKCIKAAIEALKKEKSVVIGMYSIISTTYAISD 326


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 2/95 (2%)

Query: 319  RISSVKPLSQYAPIEGRVSTKDYVISEADAKLTKELLMELEHGDGVTYGVVETKPLMHYK 378
            R SS   L Q  P++  VS + Y  + +   L K         D  T  VV+T  + + +
Sbjct: 1021 RSSSSTSLVQSNPVKTVVSLESYKFTTSKISLVKNPTKTYTVTDVETNVVVQTHTVSYVE 1080

Query: 379  KEASKRRVHDIGTETESPEIEEYREPNTEAEVKAE 413
               S   VH   T  E  ++E   +  +E   K++
Sbjct: 1081 HSTSYTWVHT--TLYEYADVEASTKSTSEPSAKSK 1113


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.136    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,035,865
Number of Sequences: 5004
Number of extensions: 87838
Number of successful extensions: 223
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 222
Number of HSP's gapped (non-prelim): 3
length of query: 422
length of database: 2,362,478
effective HSP length: 75
effective length of query: 347
effective length of database: 1,987,178
effective search space: 689550766
effective search space used: 689550766
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)