Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000547-TA|BGIBMGA000547-PA|IPR000832|GPCR, family 2,
secretin-like, IPR003287|Calcitonin receptor-related
         (75 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20935| Best HMM Match : F5_F8_type_C (HMM E-Value=6.1e-29)          28   1.2  
SB_19650| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-05)                 28   1.2  
SB_27393| Best HMM Match : zf-C3HC4 (HMM E-Value=4.8e-18)              27   2.2  
SB_18415| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.0  
SB_13667| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.7  
SB_13345| Best HMM Match : Hormone_4 (HMM E-Value=3.9)                 25   8.7  

>SB_20935| Best HMM Match : F5_F8_type_C (HMM E-Value=6.1e-29)
          Length = 273

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 9/26 (34%), Positives = 18/26 (69%)

Query: 36  NLFISFILNNIMWIVWYKTVVDYIEV 61
           N+F+++ +N  MW   +K V +Y++V
Sbjct: 153 NVFVNYTVNRGMWTAKHKVVGEYLQV 178


>SB_19650| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-05)
          Length = 300

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/47 (25%), Positives = 29/47 (61%), Gaps = 2/47 (4%)

Query: 24  RHFQYKRTRIHANLFISFILNNIMWIVW--YKTVVDYIEVVQENTVI 68
           R FQ+K +R+  N+ I+F++   +W++    + V++     Q++T++
Sbjct: 236 RSFQHKGSRLLINVLIAFVVPYSLWVLLTALRLVINPELTYQQDTIV 282


>SB_27393| Best HMM Match : zf-C3HC4 (HMM E-Value=4.8e-18)
          Length = 391

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)

Query: 33  IHANLFISFI---LNNIMWIVWYKTVVDYIEVVQENT 66
           +H  LFI+F+   L +I WIVW +       V +  T
Sbjct: 249 LHIGLFIAFVTMLLTSITWIVWSRVSSTPTAVAERTT 285


>SB_18415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 623

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/41 (26%), Positives = 26/41 (63%), Gaps = 3/41 (7%)

Query: 29  KRTRIHANLFISFILNNIMWIVWYKTVVDY-IEVVQENTVI 68
           K  R+H  L++ FI+  ++ + W+   +DY ++ V++N ++
Sbjct: 67  KSLRLHDWLYLGFIILTVIVLHWF--FIDYFVQRVRQNMIL 105


>SB_13667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 26 FQYKRTRIHANLFISFILNNIMWIVWYKTVVDY 58
          + YKR +   N F+S  L+     VW+  ++ Y
Sbjct: 17 YVYKRLKFLGNRFLSLGLSQTFLAVWHGYMIGY 49


>SB_13345| Best HMM Match : Hormone_4 (HMM E-Value=3.9)
          Length = 448

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/43 (20%), Positives = 27/43 (62%), Gaps = 2/43 (4%)

Query: 21  VFLRHFQYKRTRIHANLFISFI--LNNIMWIVWYKTVVDYIEV 61
           + L+HF Y  +++++ L ++++  LN  ++  +YK ++  + +
Sbjct: 269 LLLQHFSYSNSKMNSKLKLNYVLWLNTWLFDQFYKHMIYIVSI 311


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.335    0.147    0.480 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,908,841
Number of Sequences: 59808
Number of extensions: 49237
Number of successful extensions: 181
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 177
Number of HSP's gapped (non-prelim): 6
length of query: 75
length of database: 16,821,457
effective HSP length: 53
effective length of query: 22
effective length of database: 13,651,633
effective search space: 300335926
effective search space used: 300335926
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.6 bits)
S2: 52 (25.0 bits)