Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000547-TA|BGIBMGA000547-PA|IPR000832|GPCR, family 2,
secretin-like, IPR003287|Calcitonin receptor-related
         (75 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03250.1 68415.m00278 EXS family protein / ERD1/XPR1/SYG1 fam...    25   4.6  
At2g03240.1 68415.m00277 EXS family protein / ERD1/XPR1/SYG1 fam...    25   4.6  
At1g14040.1 68414.m01660 EXS family protein / ERD1/XPR1/SYG1 fam...    25   6.1  
At1g26730.1 68414.m03255 EXS family protein / ERD1/XPR1/SYG1 fam...    25   8.0  

>At2g03250.1 68415.m00278 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to  PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 756

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 34  HANLFI-SFILNNIMWIVWYKTVVDY-IEVVQENTVI 68
           H  +++ + ILN ++   W +TV+D+  E +   TV+
Sbjct: 674 HKEVYVLAMILNVVLRFAWMQTVLDFKFESIHTQTVV 710


>At2g03240.1 68415.m00277 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to  PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 823

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 38  FISFILNNIMWIVWYKTVVDY 58
           FI+ ILN ++   W +TV+D+
Sbjct: 742 FIAMILNILLRFAWLQTVLDF 762


>At1g14040.1 68414.m01660 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 798

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 8/21 (38%), Positives = 15/21 (71%)

Query: 38  FISFILNNIMWIVWYKTVVDY 58
           FI+ +LN ++   W +TV+D+
Sbjct: 717 FIAMVLNVLLRFAWIQTVLDF 737


>At1g26730.1 68414.m03255 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to  PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 750

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 8/32 (25%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 38  FISFILNNIMWIVWYKTVVDY-IEVVQENTVI 68
           +++ +LN ++ + W +TV+D+ +  +   T+I
Sbjct: 669 YVAIVLNIVLRMAWLQTVLDFNLSFLHRETMI 700


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.335    0.147    0.480 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,393,264
Number of Sequences: 28952
Number of extensions: 36698
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 91
Number of HSP's gapped (non-prelim): 4
length of query: 75
length of database: 12,070,560
effective HSP length: 55
effective length of query: 20
effective length of database: 10,478,200
effective search space: 209564000
effective search space used: 209564000
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.6 bits)
S2: 51 (24.6 bits)