GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000547-TA|BGIBMGA000547-PA|IPR000832|GPCR, family 2,
secretin-like, IPR003287|Calcitonin receptor-related
         (75 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo...    26   0.52 
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    23   3.7  
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr...    23   4.9  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    23   6.5  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    22   8.5  

>SPCC594.04c |||steroid oxidoreductase superfamily
          protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 26.2 bits (55), Expect = 0.52
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)

Query: 26 FQYKRTRIHANLFISFILNNIMW--IVWYK 53
          F Y        L +SFIL N++W   VW K
Sbjct: 40 FYYNTNPFVVGLLLSFILGNVLWGVSVWTK 69


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 684

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 32 RIHANLFISFILNNIMWIVWYKTVVDYIEVVQENT 66
          R+  +LF  +  N I+  V Y+T+VD +  V  N+
Sbjct: 28 RLDLSLFRRYNTNTIVGSVAYETLVDTVCDVSSNS 62


>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 454

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 40 SFILNNIMWIVWYKTVVDYIEVVQENTVIRNFDA 73
          S++ ++   I+ YK +    E VQ N + RN  A
Sbjct: 15 SYLRSSWQAILNYKYIYQNAEAVQRNCINRNLQA 48


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 9/29 (31%), Positives = 18/29 (62%)

Query: 37  LFISFILNNIMWIVWYKTVVDYIEVVQEN 65
           +  +F+L ++   VW KT V+Y+ + + N
Sbjct: 312 VIFAFVLFDLDCYVWEKTRVNYMLIFEFN 340


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 24  RHFQYKRTRIHANLFISFILNNIMWIVWY 52
           R   Y    I  NL+  F+LN  M+++ Y
Sbjct: 223 RSKNYPNLVIDRNLYKDFLLNRDMFLIAY 251


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.335    0.147    0.480 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 292,436
Number of Sequences: 5004
Number of extensions: 8653
Number of successful extensions: 27
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 5
length of query: 75
length of database: 2,362,478
effective HSP length: 55
effective length of query: 20
effective length of database: 2,087,258
effective search space: 41745160
effective search space used: 41745160
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.6 bits)
S2: 45 (22.2 bits)