Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000546-TA|BGIBMGA000546-PA|undefined
         (1221 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    25   4.2  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    24   7.3  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   9.6  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 662 RLFTDLCTLFTQFCQRGAEGMRDLFRI 688
           R F  LC  + +FC R +   +DL ++
Sbjct: 536 RAFLGLCNFYRKFCARYSAATQDLNKL 562


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
            transcription factor protein.
          Length = 249

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 14/62 (22%), Positives = 27/62 (43%)

Query: 1131 KRRCVRQSRPSANLDNFMSDSLREXXXXXXXXXXXTIRTAFREHMRNIARNRASDSEDYD 1190
            KRR  R +     L   + D++++            I     +H++N+ R +A+ S   D
Sbjct: 44   KRRRARINNSLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLQNLQRQQAAMSAATD 103

Query: 1191 PA 1192
            P+
Sbjct: 104  PS 105


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 712 NLNGIMENAQTQSNMVRPYLRFRDGSRLSTPPPLPQ 747
           N    ++NA   +N++ P    RD S+ +   P PQ
Sbjct: 665 NQRNFLKNALMSNNILPPESPTRDKSKQNEKSPSPQ 700


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.131    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,702
Number of Sequences: 317
Number of extensions: 7505
Number of successful extensions: 37
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 4
length of query: 1221
length of database: 114,650
effective HSP length: 65
effective length of query: 1156
effective length of database: 94,045
effective search space: 108716020
effective search space used: 108716020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)