Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000546-TA|BGIBMGA000546-PA|undefined
         (1221 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47924| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.46 
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)                34   0.61 
SB_41722| Best HMM Match : Extensin_2 (HMM E-Value=0.35)               32   3.3  
SB_7780| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   7.6  
SB_7145| Best HMM Match : RVT_1 (HMM E-Value=3.8e-25)                  31   7.6  
SB_59560| Best HMM Match : ShTK (HMM E-Value=1.6)                      30   10.0 
SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012)            30   10.0 
SB_16964| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   10.0 

>SB_47924| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 34.7 bits (76), Expect = 0.46
 Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 14/117 (11%)

Query: 1096 EEWVPVFTRDXXXXXXXXXXXXXFSDAYLTGMPSRKRRCVRQSRPSANLDNFMSDSLREX 1155
            EEWVP+  +D             FSDAYL+G+P  KRR     R     D  +   +R+ 
Sbjct: 260  EEWVPILAQDVMRQRRIPPQQP-FSDAYLSGLPP-KRRKTADERAVCPTDEVLPGIIRQA 317

Query: 1156 ------------XXXXXXXXXXTIRTAFREHMRNIARNRASDSEDYDPARYVSAARF 1200
                                   +  A+RE ++   + R     D+   R+   +++
Sbjct: 318  MLATGAPRNSIDAVTESARTNSELHQAYREEVKEAVKKRTDTDTDFSSERFPVTSQY 374


>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
          Length = 796

 Score = 34.3 bits (75), Expect = 0.61
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 92  DLVNDLMHSFAHAYHVASDLHFQVGRHPPRLTS--EPVVAHHGLP 134
           D + + +H+ +HAYH  SDL   +    PR  S   P+  H G P
Sbjct: 165 DRIAETLHNLSHAYHALSDLSINIRAPEPRRLSVLTPLSPHVGAP 209


>SB_41722| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
          Length = 343

 Score = 31.9 bits (69), Expect = 3.3
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 1/80 (1%)

Query: 717 MENAQTQSNMVRPYLRFRDGSRLSTPPPLPQAMEMAHSSGLHPTHIGVATASPYMEGEHL 776
           +++A+ +S  VR   R+  G R S  PP  +A     S+   P  +  A A       H+
Sbjct: 189 VDSARARSPRVRHQARYHSGQRQSQIPPGTRARSPVDSAKARPP-VDSARARYPRRQRHI 247

Query: 777 RGCPLRMCVESIPMGTAPRP 796
           +  P     +  P  TAP P
Sbjct: 248 KKLPWTAPEQDPPPWTAPEP 267


>SB_7780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1309

 Score = 30.7 bits (66), Expect = 7.6
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 707  ALSNDNLNGIMENAQTQSNMVRPYLRFRDGSRLSTPPPLPQAM-EMAHSSGLHPTHIGVA 765
            A++   +N I  +     N+    L  RD SR  TPPPLP  M  +    G  P   GV 
Sbjct: 1123 AMNESEVNLIENSLYANKNLAPAVLISRD-SRGHTPPPLPHRMYNLDEDFGYMPNDSGVD 1181

Query: 766  T 766
            T
Sbjct: 1182 T 1182


>SB_7145| Best HMM Match : RVT_1 (HMM E-Value=3.8e-25)
          Length = 455

 Score = 30.7 bits (66), Expect = 7.6
 Identities = 12/48 (25%), Positives = 26/48 (54%)

Query: 575 RHYIQDLLNRADRCQGENAFQAVADYLVDQHEEFIRNMSTITPVVEEF 622
           R+ +  +L   +RC  +  F  ++ ++     EF++  ST+T +VE +
Sbjct: 156 RNILDLILTILERCVFKRCFNFISPHIYQLQHEFLKGKSTVTQLVEVY 203


>SB_59560| Best HMM Match : ShTK (HMM E-Value=1.6)
          Length = 263

 Score = 30.3 bits (65), Expect = 10.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 655 RFYRVFCRLFTDLCTLFTQFCQRGAEGMRD 684
           R Y  +CR +TD C  +T +C+   +  RD
Sbjct: 81  RDYTDYCRDYTDYCRDYTDYCRENTDYCRD 110


>SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012)
          Length = 1148

 Score = 30.3 bits (65), Expect = 10.0
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 692 EIMEDFDDAARAMILALSNDNLNGIMENAQTQSNMVRPYLRFRDGSR-LSTPPP 744
           +++E+ +D  R+ I  L N + N   + AQ    + RP   ++D  R   TP P
Sbjct: 837 QLLEEQNDKLRSSITLLMNASANAPRKTAQDPMTLWRPQSSYKDDKRKYRTPSP 890


>SB_16964| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 229

 Score = 30.3 bits (65), Expect = 10.0
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 692 EIMEDFDDAARAMILALSNDNLNGIMENAQTQSNMVRPYLRFRDGSR-LSTPPP 744
           +++E+ +D  R+ I  L N + N   + AQ    + RP   ++D  R   TP P
Sbjct: 32  QLLEEQNDKLRSSITLLMNASANAPRKTAQDPMTLWRPQSSYKDDKRKYRTPSP 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.131    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,629,925
Number of Sequences: 59808
Number of extensions: 1037526
Number of successful extensions: 2484
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2442
Number of HSP's gapped (non-prelim): 45
length of query: 1221
length of database: 16,821,457
effective HSP length: 90
effective length of query: 1131
effective length of database: 11,438,737
effective search space: 12937211547
effective search space used: 12937211547
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)