GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000546-TA|BGIBMGA000546-PA|undefined
         (1221 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    33   0.32 
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||...    30   1.7  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    29   3.0  
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi...    29   4.0  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    28   9.2  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    28   9.2  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    28   9.2  

>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 12/65 (18%)

Query: 210 EHLQLNQATSAQAGTELGVEIQGGPTTSMQVNAADVNTAQPSAIDD-DQSNPVTYEV-EI 267
           E  ++N   SAQ+GTE+G   Q  P+         VN ++P A +D D+ +P +Y+V EI
Sbjct: 159 EIFEINSGLSAQSGTEVG-SSQSSPS---------VNESEPKATEDLDELSPGSYKVKEI 208

Query: 268 ETRVP 272
             R P
Sbjct: 209 HIRSP 213


>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 380

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 5/78 (6%)

Query: 537 TAFMVTVARHLFLMEPMQSQNGEPI----LVPNEFNSVRIHLRHYIQDLLNRADRCQGEN 592
           T F  T+  H+   E +++++ E      +   E      HLR  + D     D      
Sbjct: 47  TLFSTTIKSHMG-PEKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINNSG 105

Query: 593 AFQAVADYLVDQHEEFIR 610
            +++V +++ DQHE ++R
Sbjct: 106 CWESVVEFIEDQHESYMR 123


>SPBC23E6.09 |ssn6||transcriptional corepressor
            Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/68 (29%), Positives = 30/68 (44%)

Query: 1034 SLPRTSSHGEAWQPRPDQVSNSSTVPPQNEANGRSPVGASRNGNVSPDLQFVSPVVLMQH 1093
            +LP  +S  +  QP P   S +  V PQN+    S + A +  NV P     S   L+  
Sbjct: 273  TLPAANSAVQNAQPVPMTSSPAMAVVPQNKTAATSTLAAQQGANVLPPNAPESVRHLISL 332

Query: 1094 WGEEWVPV 1101
              E W+ +
Sbjct: 333  NEETWIQI 340


>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
            Usp102|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 249

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 11/68 (16%)

Query: 1030 NRSESLPRTSSHGEAWQPRPDQVSNSSTVPPQNEANGRSPVGASRNGNVSPDLQFVSPVV 1089
            NR E L RTS    A QP   + ++   VP +N       VGA R   ++ DL   + V+
Sbjct: 128  NRREMLKRTS----ALQPAAPKPTHKKPVPKRN-------VGAERKSTINEDLLPPNKVL 176

Query: 1090 LMQHWGEE 1097
            L+Q+  +E
Sbjct: 177  LLQNIPQE 184


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/31 (35%), Positives = 21/31 (67%)

Query: 687 RIYMGEIMEDFDDAARAMILALSNDNLNGIM 717
           +I++G  ++D+       +L+L N+NLNGI+
Sbjct: 862 KIFVGGTLKDYQLKGLEWMLSLYNNNLNGIL 892


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 613 STITPVVEEFDITTSFRNFVRSRLPAIIASVMSDAPGESFAPRFYRV 659
           S +TPV     +T+ ++N ++ R      S+++D  G SFA +  R+
Sbjct: 697 SLVTPVTPNKLVTSDYKNVLKIRTRTFSLSLLND-DGSSFALKCIRI 742


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 549

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/38 (36%), Positives = 17/38 (44%)

Query: 1181 NRASDSEDYDPARYVSAARFLNAGRSDSRQPPESSEDS 1218
            NR S  EDYD  +    +R  N  R      P+S  DS
Sbjct: 302  NRPSQQEDYDKPKNTQVSRSSNHHRRYDSYHPDSRSDS 339


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.131    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,970,088
Number of Sequences: 5004
Number of extensions: 142189
Number of successful extensions: 336
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 330
Number of HSP's gapped (non-prelim): 9
length of query: 1221
length of database: 2,362,478
effective HSP length: 81
effective length of query: 1140
effective length of database: 1,957,154
effective search space: 2231155560
effective search space used: 2231155560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)