GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000546-TA|BGIBMGA000546-PA|undefined
         (1221 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0747 - 35967119-35967185,35967325-35967422,35967533-359675...    33   1.4  
08_02_0202 - 14202996-14203241,14203630-14203823,14203947-142045...    31   7.5  
09_04_0176 + 15361766-15362836                                         30   10.0 
02_04_0435 + 22912993-22913456,22913847-22914012,22914096-229141...    30   10.0 

>03_06_0747 -
           35967119-35967185,35967325-35967422,35967533-35967574,
           35967734-35967782,35967971-35968047,35968306-35968362,
           35968511-35968611,35968698-35969106
          Length = 299

 Score = 33.1 bits (72), Expect = 1.4
 Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 1/124 (0%)

Query: 523 QFLNSSEENQEIWLTAFMVTVARHLFLMEPMQSQNGEPILVPNEFNSVRIHLRHYIQDLL 582
           +F N  EE      +  M++      L   M    G PI+   EF+ +++ L+    D++
Sbjct: 118 EFDNLKEELMWEGSSVVMLSPDEQRLLEASMAYAAGNPIMSDAEFDQLKLRLKKDGSDIV 177

Query: 583 NRADRCQGENAFQAVADYLVDQHEEFIRNMSTITPVVEEFDITTSFRNFVRSRLPAIIAS 642
               RC   +  +  +D  VD  + F+ N+   T  +  F        F  +   +I  +
Sbjct: 178 TEGPRCSLRSR-KVYSDLTVDYLKMFLLNVPATTLALGLFFFIDELTGFEINIFQSITNA 236

Query: 643 VMSD 646
           +++D
Sbjct: 237 IVND 240


>08_02_0202 -
           14202996-14203241,14203630-14203823,14203947-14204559,
           14205422-14205535
          Length = 388

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 748 AMEMAHSSGLHPTHIGVATASPYMEGEHLRGCPLRMCVESIPMGTA-PRPM 797
           A E  +SS  H   + + + +  +   H R CP+   V+ +P+  A P+PM
Sbjct: 141 ATETLNSSRAHSQPMPMQSTTETVNHSHARPCPMHTAVDCMPLSHAHPQPM 191


>09_04_0176 + 15361766-15362836
          Length = 356

 Score = 30.3 bits (65), Expect = 10.0
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 59  PHRESYIEMLKEANNPETPEYTGQERAHSQRIVDLVNDLMHSFAHAYH-VASDLHFQVGR 117
           P  +++  +L + ++ +  E  G    H Q   +    L  SF H +H   +  ++Q   
Sbjct: 3   PFNKTFTNLLNQGSSSQATESDGPNPPHPQFPTNFPQYLRPSFLHNFHPFGTPTNYQPYS 62

Query: 118 HPP 120
           HPP
Sbjct: 63  HPP 65


>02_04_0435 + 22912993-22913456,22913847-22914012,22914096-22914146,
            22914353-22914578,22915275-22915963,22916055-22916408
          Length = 649

 Score = 30.3 bits (65), Expect = 10.0
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 1032 SESLPRTSSHGEAWQPRPDQVSNSSTVPPQ--NEANGRSPVGASRNGNVSPD 1081
            + SLP  SS  + WQ  PD  S  + V P+  +  NG   +  + N   SPD
Sbjct: 550  ANSLP--SSEAKTWQAFPDPKSQPAQVRPKVDHSTNGAQNLARNANSRQSPD 599


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.131    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,375,446
Number of Sequences: 37544
Number of extensions: 983332
Number of successful extensions: 2457
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2457
Number of HSP's gapped (non-prelim): 4
length of query: 1221
length of database: 14,793,348
effective HSP length: 90
effective length of query: 1131
effective length of database: 11,414,388
effective search space: 12909672828
effective search space used: 12909672828
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)