GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000546-TA|BGIBMGA000546-PA|undefined
         (1221 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein.     30   8.8  
AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable abno...    30   8.8  

>AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein.
          Length = 1040

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 1053 SNSSTVPPQNEANGRSPVGASRNGNVSPDLQFVSPVV 1089
            S S++ PPQ  A+   PV    NG+ SP  Q   P+V
Sbjct: 360  STSTSPPPQAPASAFEPVKPLSNGSPSPTHQVQKPIV 396


>AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable abnormal
            morphology protein19 protein.
          Length = 1040

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 1053 SNSSTVPPQNEANGRSPVGASRNGNVSPDLQFVSPVV 1089
            S S++ PPQ  A+   PV    NG+ SP  Q   P+V
Sbjct: 360  STSTSPPPQAPASAFEPVKPLSNGSPSPTHQVQKPIV 396


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.131    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,783,611
Number of Sequences: 27539
Number of extensions: 803737
Number of successful extensions: 2062
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2058
Number of HSP's gapped (non-prelim): 4
length of query: 1221
length of database: 12,573,161
effective HSP length: 90
effective length of query: 1131
effective length of database: 10,094,651
effective search space: 11417050281
effective search space used: 11417050281
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)