GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000546-TA|BGIBMGA000546-PA|undefined
         (1221 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    28   0.53 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    25   5.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   5.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   5.0  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
            protein.
          Length = 500

 Score = 27.9 bits (59), Expect = 0.53
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 1051 QVSNSSTVPPQNEANGRSPVGASRNGNVSPDLQ-FVSP 1087
            Q++NS+T+  +NE +   PV   ++   SPDL  F SP
Sbjct: 9    QITNSTTMSVKNEISTVEPVDPVKSLVCSPDLSVFTSP 46


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 587 RCQGENAFQAVADYLVDQHEEFIRNMSTITPVVEEFDITTSFR 629
           R  GENA    A   V+    F+R+++TI+ +  E+ +  +FR
Sbjct: 48  RPSGENATDGPAIVRVNL---FVRSIATISDIKMEYSVQLTFR 87


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 908  SRIVTETPS-RVASAVLSTGVSSVHPWAGS 936
            S++  + P+ RV + + S G   V PW GS
Sbjct: 1301 SKVAAQVPTNRVPARITSFGGHVVRPWRGS 1330


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 908  SRIVTETPS-RVASAVLSTGVSSVHPWAGS 936
            S++  + P+ RV + + S G   V PW GS
Sbjct: 1297 SKVAAQVPTNRVPARITSFGGHVVRPWRGS 1326


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.131    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 251,201
Number of Sequences: 429
Number of extensions: 9727
Number of successful extensions: 30
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 4
length of query: 1221
length of database: 140,377
effective HSP length: 66
effective length of query: 1155
effective length of database: 112,063
effective search space: 129432765
effective search space used: 129432765
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)