GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000546-TA|BGIBMGA000546-PA|undefined
         (1221 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g45231.2 68414.m05189 WW domain-containing protein Since this...    33   1.2  
At4g22890.3 68417.m03307 expressed protein                             31   6.3  
At4g22890.2 68417.m03306 expressed protein                             31   6.3  
At4g22890.1 68417.m03305 expressed protein                             31   6.3  
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co...    31   6.3  

>At1g45231.2 68414.m05189 WW domain-containing protein Since this
           genomic sequence region is unfinished, the annotated
           gene may be missing a stop codon or start codon
          Length = 538

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 388 GGVFLAPSMPWGGPPNIDMLHNIASTLLRQELGSGLDRVAVHVTPPIVI 436
           G VFL+P  PWGGP  +        T+LR   G  L + A+++   I++
Sbjct: 434 GTVFLSP--PWGGPDYLKASTYDMKTMLRPRDGDALFKAAMNIASTIIM 480


>At4g22890.3 68417.m03307 expressed protein
          Length = 324

 Score = 30.7 bits (66), Expect = 6.3
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 523 QFLNSSEENQEIWLTAFMVTVARHLFLMEPMQSQNGEPILVPNEFNSVRIHLRHYIQDLL 582
           +F N  EE      +  M++     FL   M   +G PIL   E++ +++ L+    D++
Sbjct: 118 EFDNLKEELMWEGSSVVMLSSDEQRFLEASMAYVSGNPILNDEEYDKLKLKLKIDGSDIV 177

Query: 583 NRADRCQGENAFQAVADYLVDQHEEFIRNM 612
           +   RC   +  +  +D  VD  +  + N+
Sbjct: 178 SEGPRCSLRSK-KVYSDLAVDYFKMLLLNV 206


>At4g22890.2 68417.m03306 expressed protein
          Length = 324

 Score = 30.7 bits (66), Expect = 6.3
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 523 QFLNSSEENQEIWLTAFMVTVARHLFLMEPMQSQNGEPILVPNEFNSVRIHLRHYIQDLL 582
           +F N  EE      +  M++     FL   M   +G PIL   E++ +++ L+    D++
Sbjct: 118 EFDNLKEELMWEGSSVVMLSSDEQRFLEASMAYVSGNPILNDEEYDKLKLKLKIDGSDIV 177

Query: 583 NRADRCQGENAFQAVADYLVDQHEEFIRNM 612
           +   RC   +  +  +D  VD  +  + N+
Sbjct: 178 SEGPRCSLRSK-KVYSDLAVDYFKMLLLNV 206


>At4g22890.1 68417.m03305 expressed protein
          Length = 324

 Score = 30.7 bits (66), Expect = 6.3
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 523 QFLNSSEENQEIWLTAFMVTVARHLFLMEPMQSQNGEPILVPNEFNSVRIHLRHYIQDLL 582
           +F N  EE      +  M++     FL   M   +G PIL   E++ +++ L+    D++
Sbjct: 118 EFDNLKEELMWEGSSVVMLSSDEQRFLEASMAYVSGNPILNDEEYDKLKLKLKIDGSDIV 177

Query: 583 NRADRCQGENAFQAVADYLVDQHEEFIRNM 612
           +   RC   +  +  +D  VD  +  + N+
Sbjct: 178 SEGPRCSLRSK-KVYSDLAVDYFKMLLLNV 206


>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
           contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
           PF04815: Sec23/Sec24 helical domain and PF04810:
           Sec23/Sec24 zinc finger
          Length = 1096

 Score = 30.7 bits (66), Expect = 6.3
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 376 GNNAGPGAPQFEGGVFLAPSMPWGGPPN 403
           G  A P   QF  G  +AP  P+G PPN
Sbjct: 230 GPGAFPRGSQFTSGPMMAPPPPYGQPPN 257


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.131    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,511,039
Number of Sequences: 28952
Number of extensions: 740482
Number of successful extensions: 1809
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1807
Number of HSP's gapped (non-prelim): 6
length of query: 1221
length of database: 12,070,560
effective HSP length: 89
effective length of query: 1132
effective length of database: 9,493,832
effective search space: 10747017824
effective search space used: 10747017824
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)