GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000545-TA|BGIBMGA000545-PA|IPR000225|Armadillo
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    29   3.2  
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    28   5.6  
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    27   7.4  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    27   9.8  

>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 524 LISDRLNRRICDDVLEVAWSTMWNVTDETPQNCQRFLENRGMEFFLACLKNFPDNEELLR 583
           + +DR N  +  DV++ A+S++    +  P    R+ + +  E F + L   P+    +R
Sbjct: 382 IAADRKNGIVSSDVIQAAYSSLGLEAEVGPD--YRYSQEKIFEAFHSALLRKPEFARAIR 439

Query: 584 NMMGLLGNVAEVGEL 598
           N +  +G   +  E+
Sbjct: 440 NDLETIGYARKSSEI 454


>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 5/44 (11%)

Query: 209 TRLRNLRSLVLHSVHWTKDITD----WIIG-LRALQHLDISQSN 247
           T LRN+R  ++ ++H+T+ +TD    W  G L  L  LD  + N
Sbjct: 48  TLLRNVRKELMENIHFTEKVTDIYRVWQTGDLANLDGLDKKEQN 91


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 536 DVLEVAWSTMWNVTDETPQNCQRFLENRGMEFFLACLKNFPDNEELLRNMMGLLGNVAEV 595
           DV+ V W++ W  T++ P    R       +F    L++ P N   + N+  L+     V
Sbjct: 356 DVIGVGWASNWQYTNQAPTQVFRSAMTVARKF---TLRDVPQNP--MTNLTSLIQTPLNV 410

Query: 596 GELRPQLM 603
             LR + +
Sbjct: 411 SLLRDETL 418


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 17/141 (12%)

Query: 366 RVLNDLYYLFRYEN-NTNVLRALNVVLDAMDRHVSEKHIQISGSATLFYIVKGKEKERIG 424
           ++ N L+ L   E   T++LRALN++L     + +   + +    T    ++ K+ E   
Sbjct: 19  KLCNKLFTLRTQEGFETDILRALNIILTVKKGNSNADRV-LRFLVTFVNYLQQKDPE--- 74

Query: 425 IKMKKRIITALLDGMDAHLGDDTMMRNGCLTL-----CEFKIPNDVLFEYERAVQILLSG 479
           I + + I+  +L G+DA   D T+    C  +     C  +I +D+   Y    + LLS 
Sbjct: 75  IDIVQPILKHILRGLDAK--DKTVRYRCCQIIARVVNCVKEIDDDL---YNTLKEKLLSR 129

Query: 480 VTDVNQEGSVQRIAIYLLNSL 500
           V D  +E  V+  A+  L+ L
Sbjct: 130 VLD--RESIVRLEAVVALSRL 148


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.137    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,562,293
Number of Sequences: 5004
Number of extensions: 151885
Number of successful extensions: 382
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 382
Number of HSP's gapped (non-prelim): 4
length of query: 767
length of database: 2,362,478
effective HSP length: 78
effective length of query: 689
effective length of database: 1,972,166
effective search space: 1358822374
effective search space used: 1358822374
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)