Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000543-TA|BGIBMGA000543-PA|undefined
         (118 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    20   7.3  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    20   7.3  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    20   7.3  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    19   9.7  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 19.8 bits (39), Expect = 7.3
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query: 45  GTGTVLVVCQRINAYEEIARAL 66
           GT  +L   QR N Y + A  L
Sbjct: 215 GTSAMLAAYQRYNPYLQAASML 236


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 19.8 bits (39), Expect = 7.3
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 70  FSTETKIGLDISYSQLPDFAEHSFRELGLS 99
           F    ++  DISYSQ     E    +L LS
Sbjct: 175 FQALLRMDRDISYSQRMARVEEVISDLALS 204


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 19.8 bits (39), Expect = 7.3
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 70  FSTETKIGLDISYSQLPDFAEHSFRELGLS 99
           F    ++  DISYSQ     E    +L LS
Sbjct: 175 FQALLRMDRDISYSQRMARVEEVISDLALS 204


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 19.4 bits (38), Expect = 9.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 95  ELGLSITRLKLNFDNLR 111
           ELGL+  ++K+ F N R
Sbjct: 264 ELGLNEAQIKIWFQNKR 280


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.324    0.135    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,706
Number of Sequences: 317
Number of extensions: 608
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 118
length of database: 114,650
effective HSP length: 50
effective length of query: 68
effective length of database: 98,800
effective search space:  6718400
effective search space used:  6718400
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.7 bits)
S2: 38 (19.4 bits)