GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000543-TA|BGIBMGA000543-PA|undefined
         (118 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    27   0.59 
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch...    27   0.59 
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    25   2.4  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   4.1  
SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo...    25   4.1  
SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces...    24   7.2  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    23   9.6  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    23   9.6  

>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 27.5 bits (58), Expect = 0.59
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 4/72 (5%)

Query: 43   DTGTGTVLVVCQRINAYEEIARALTNKFSTETKIGLDISYSQLPDFAEHSFRELG----L 98
            DT +  V+       AY+ I   L   FST+TK  L I  S LP   + + +++     +
Sbjct: 1522 DTLSCNVIFSGNERKAYKLIDEKLLQYFSTKTKNSLLIIESSLPHILKANVKQIEELPYI 1581

Query: 99   SITRLKLNFDNL 110
             I RL+ N  +L
Sbjct: 1582 MIPRLESNIQSL 1593


>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 27.5 bits (58), Expect = 0.59
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 60  EEIARALTNKFSTETKI-GLDISYSQLPDFAEHSFRELGLSITRLKL 105
           E+I++     FST+  I  LDIS S  P+ + + F +LG  + + ++
Sbjct: 290 EQISKVYYPIFSTDVSIPALDISLSNTPNNSFYKFDKLGSDLIKQRV 336


>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 13/51 (25%), Positives = 23/51 (45%)

Query: 65  ALTNKFSTETKIGLDISYSQLPDFAEHSFRELGLSITRLKLNFDNLRQVAM 115
           A+TN F     + L +     PD+A   +   G++      NF+ + Q+ M
Sbjct: 190 AITNSFLKTYNLRLCVITRHSPDYAGTRYFTRGVNAQGSAANFNEIEQIIM 240


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 42  EDTGTGTVLVVCQRINAYEEIARALTNKFSTETKIGLDISYSQLP 86
           +DT  G   +V      Y ++ARA+ NK + +    L  + + LP
Sbjct: 835 DDTNNGVFDLVLTTHTNYTDMARAVANKLNVDPNY-LQFTMAHLP 878


>SPAC12B10.07 |acp1||F-actin capping protein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 77  GLDISYS-QLPDFAEHSFRELG--LSITRLKLNFDNLRQVAMK 116
           G+  S++ +L    +  F+EL   L +TR K+N++N+  + M+
Sbjct: 212 GIQQSFNVELSSLNDKKFKELRRQLPVTRQKINWENVSGIRMR 254


>SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 338

 Score = 23.8 bits (49), Expect = 7.2
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 37  CTCRREDTGTGTVLVVCQRINAYEEIARALTNKFST 72
           CT    +T  G +LV+C ++  Y  I R L + + T
Sbjct: 234 CTTNMYETFLGPILVMCAKLGFY--ICRLLGSPWHT 267


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 78  LDISYSQLPDFAEHSFRELGLSITRLKLNF 107
           +DI  + L D+ + +F   GLS ++ K  F
Sbjct: 647 MDIQETFLQDYEDETFANEGLSASKFKEEF 676


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 51  VVCQRINAYEEIARALTNKFSTETKIGLDISYSQLPD 87
           V  + +NA E    +LT+  +      LDISY+QL D
Sbjct: 646 VTIRDLNAVENRLSSLTSFSNLLNLQYLDISYNQLED 682


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.135    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 407,704
Number of Sequences: 5004
Number of extensions: 13121
Number of successful extensions: 44
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 8
length of query: 118
length of database: 2,362,478
effective HSP length: 65
effective length of query: 53
effective length of database: 2,037,218
effective search space: 107972554
effective search space used: 107972554
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 48 (23.4 bits)