Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000543-TA|BGIBMGA000543-PA|undefined
(118 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0002 - 13986969-13989338 30 0.42
01_07_0229 + 42161770-42164562 27 3.0
08_01_0180 - 1524302-1524877,1525998-1527056 27 3.9
11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008 27 5.2
11_08_0032 - 27807489-27807497,27807641-27807684,27808046-278081... 27 5.2
11_03_0207 + 11675204-11676542,11676829-11676962,11677171-116774... 27 5.2
07_02_0025 - 11939976-11940158,11941166-11941378,11943191-119433... 27 5.2
06_02_0214 + 13141213-13143741 27 5.2
04_04_0953 + 29629286-29629846 27 5.2
04_03_0194 - 12499619-12499706,12500141-12500328 26 6.8
02_05_0693 - 30977323-30977421,30977783-30977843,30978874-309789... 26 6.8
03_01_0441 + 3418622-3420988 26 9.0
>10_08_0002 - 13986969-13989338
Length = 789
Score = 30.3 bits (65), Expect = 0.42
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 69 KFSTETKIGLDISYSQLPDFAEHSFRELGLSITRLKLNF 107
+F+ G+DI +L +FA+ F GLS R + F
Sbjct: 668 RFNANAAAGIDIDLKKLEEFADDKFHSTGLSELRKETTF 706
>01_07_0229 + 42161770-42164562
Length = 930
Score = 27.5 bits (58), Expect = 3.0
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 58 AYEEIARALTNKFSTETKIGLDISYSQLPDFAEHSFRELGLS---ITRLKLNFDNLRQVA 114
A + RA++ K T + L +SY L H +G + TRLKL++D L+
Sbjct: 315 ALATLGRAMSTK-RTRHEWALALSY--LKKSRIHEIPNMGNTSHIYTRLKLSYDYLQDKQ 371
Query: 115 MKYC 118
+KYC
Sbjct: 372 IKYC 375
>08_01_0180 - 1524302-1524877,1525998-1527056
Length = 544
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 77 GLDISYSQLPDFAEHSFR 94
G+DI +S P FAEH R
Sbjct: 112 GVDIPFSSFPHFAEHKLR 129
>11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008
Length = 1058
Score = 26.6 bits (56), Expect = 5.2
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 48 TVLVVCQRINAYEEIARALTNKFSTETKIGL----DISYSQLPDFAEHSFRELGLSITRL 103
T +C R+ +Y+EI RA T F+ + +G+ + +L D + + L + + R
Sbjct: 728 TADAICHRLVSYQEIVRA-TENFNEDNLLGVGSFGKVFKGRLDDGLVVAIKILNMQVERA 786
Query: 104 KLNFD 108
+FD
Sbjct: 787 IRSFD 791
>11_08_0032 -
27807489-27807497,27807641-27807684,27808046-27808168,
27810770-27810983,27811382-27811530,27811719-27812618,
27812964-27814659
Length = 1044
Score = 26.6 bits (56), Expect = 5.2
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 47 GTVLVVCQRINAYEEIARALTNKFSTETKIGL----DISYSQLPDFAEHSFRELGLSITR 102
G +C R+ +Y+EI RA T F+ + +G+ + +L D + + L + + R
Sbjct: 672 GIADAICHRLVSYQEIVRA-TENFNEDNLLGVGSFGKVFKGRLDDGLVVAIKILNMQVER 730
Query: 103 LKLNFD 108
+FD
Sbjct: 731 AIRSFD 736
>11_03_0207 +
11675204-11676542,11676829-11676962,11677171-11677411,
11677508-11677719,11677837-11677883,11677988-11678090,
11678594-11678830
Length = 770
Score = 26.6 bits (56), Expect = 5.2
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 50 LVVCQRINAYEEIARALTNKFSTETKIGLDISYSQLPDFAEHSFRELGLSIT 101
L VC +N + + N FS + + + Y Q P S +++GL +T
Sbjct: 342 LPVCLNVNVNNRVVKFDGNCFSDDPEHQHETKYCQQPHKGRGSNKDVGLVVT 393
>07_02_0025 -
11939976-11940158,11941166-11941378,11943191-11943323,
11943522-11943741,11944083-11944182,11944526-11944659,
11944781-11944949
Length = 383
Score = 26.6 bits (56), Expect = 5.2
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 61 EIARALTNKFSTETKI---GLDISY-SQLPDFAEHSFRELGL--SITRLK 104
EI RA TN FS E +I G I Y QLP+ E + ++L ++ RLK
Sbjct: 76 EIIRAATNGFSQENEIGRGGFGIVYKGQLPNGQEIAVKKLSKENTVQRLK 125
>06_02_0214 + 13141213-13143741
Length = 842
Score = 26.6 bits (56), Expect = 5.2
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 67 TNKFSTETKIGLDISYSQLPDFAEHSFRELGLSITRLKL 105
T KF+ T+ L +S Q PD F+E L+IT+ KL
Sbjct: 129 TAKFTVSTQEMLLLSDFQQPDKTAPLFKEYSLNITQDKL 167
>04_04_0953 + 29629286-29629846
Length = 186
Score = 26.6 bits (56), Expect = 5.2
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 40 RREDTGTGTVLVVCQRINAYEEIARALTNKFSTETKIGLDISYSQL--PDFAEHSFRELG 97
RR+D + V +++ +E A+ + ++ + + + + + L PD E FRELG
Sbjct: 97 RRKDCLSACGEVYDSAVDSLDEAAKGIASRSADGLRDAVTVLSAALDTPDTCEDGFRELG 156
Query: 98 LS 99
L+
Sbjct: 157 LA 158
>04_03_0194 - 12499619-12499706,12500141-12500328
Length = 91
Score = 26.2 bits (55), Expect = 6.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 35 SPCTCRREDTGTGTVLVVCQRINAYEE 61
SPC CR ED G G ++I YE+
Sbjct: 44 SPCPCRGEDGGMGWPGTRDRQIKKYEK 70
>02_05_0693 -
30977323-30977421,30977783-30977843,30978874-30978996,
30979258-30979340,30979847-30979924,30980375-30980506,
30980685-30980728,30980966-30981090,30981468-30981769,
30981877-30981994,30982444-30982574,30983082-30983276,
30983362-30983646
Length = 591
Score = 26.2 bits (55), Expect = 6.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 48 TVLVVCQRINAYEEIARALTNKFST 72
T+L+ Q Y+EIARA KF T
Sbjct: 349 TILLALQSPEVYDEIARATRCKFET 373
>03_01_0441 + 3418622-3420988
Length = 788
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 69 KFSTETKIGLDISYSQLPDFAEHSFRELGL 98
+F+ +GLDI L FAE F GL
Sbjct: 668 RFTVNAVMGLDIDLKLLEAFAEEKFYRTGL 697
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.324 0.135 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,492,991
Number of Sequences: 37544
Number of extensions: 76239
Number of successful extensions: 260
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 252
Number of HSP's gapped (non-prelim): 12
length of query: 118
length of database: 14,793,348
effective HSP length: 73
effective length of query: 45
effective length of database: 12,052,636
effective search space: 542368620
effective search space used: 542368620
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 54 (25.8 bits)
- SilkBase 1999-2023 -