GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000543-TA|BGIBMGA000543-PA|undefined
         (118 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38417| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.57 
SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                29   0.76 
SB_42303| Best HMM Match : RVT_1 (HMM E-Value=0.00019)                 29   1.00 
SB_34358| Best HMM Match : DUF1280 (HMM E-Value=7)                     29   1.00 
SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25)                 29   1.00 
SB_36383| Best HMM Match : SURF6 (HMM E-Value=1.2)                     28   1.7  
SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.7  

>SB_38417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1019

 Score = 29.9 bits (64), Expect = 0.57
 Identities = 15/58 (25%), Positives = 31/58 (53%)

Query: 48  TVLVVCQRINAYEEIARALTNKFSTETKIGLDISYSQLPDFAEHSFRELGLSITRLKL 105
           ++  +C+RIN +     +    F+T+  +G+ +  S +P     S RE G+++  +KL
Sbjct: 503 SITSLCERINTFFCSLTSDFVPFTTDDILGIPVDESAIPTDLYVSSREAGIALQSIKL 560


>SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 854

 Score = 29.5 bits (63), Expect = 0.76
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 80  ISYSQLPDFAEHSFRELGLSITRLKLNFDNLRQV 113
           ISYS++ D  +HSF  +     R+K  FD ++Q+
Sbjct: 743 ISYSKIFDRIKHSFDRIKQIFDRIKQIFDRIKQI 776


>SB_42303| Best HMM Match : RVT_1 (HMM E-Value=0.00019)
          Length = 736

 Score = 29.1 bits (62), Expect = 1.00
 Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 6/61 (9%)

Query: 48  TVLVVCQRINAYEEIARALTNKF---STETKIGLDISYSQLPDFAEHSFRELGLSITRLK 104
           ++  +C+RIN +     +LT+ F   +T+  +G+ +  S++P     S RE G+++  +K
Sbjct: 417 SITSLCERINTF---FCSLTSDFVPLTTDDILGIPVDESEIPTDLYVSSREAGIALQSIK 473

Query: 105 L 105
           L
Sbjct: 474 L 474


>SB_34358| Best HMM Match : DUF1280 (HMM E-Value=7)
          Length = 359

 Score = 29.1 bits (62), Expect = 1.00
 Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 6/61 (9%)

Query: 48  TVLVVCQRINAYEEIARALTNKF---STETKIGLDISYSQLPDFAEHSFRELGLSITRLK 104
           ++  +C+RIN +     +LT+ F   +T+  +G+ +  S++P     S RE G+++  +K
Sbjct: 268 SITSLCERINTF---FCSLTSDFVPLTTDDILGIPVDESEIPTDLYVSSREAGIALQSIK 324

Query: 105 L 105
           L
Sbjct: 325 L 325


>SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25)
          Length = 867

 Score = 29.1 bits (62), Expect = 1.00
 Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 6/61 (9%)

Query: 48  TVLVVCQRINAYEEIARALTNKF---STETKIGLDISYSQLPDFAEHSFRELGLSITRLK 104
           ++  +C+RIN +     +LT+ F   +T+  +G+ +  S++P     S RE G+++  +K
Sbjct: 503 SITSLCERINTF---FCSLTSDFVPLTTDDILGIPVDESEIPTDLYVSSREAGIALQSIK 559

Query: 105 L 105
           L
Sbjct: 560 L 560


>SB_36383| Best HMM Match : SURF6 (HMM E-Value=1.2)
          Length = 364

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 48  TVLVVCQRINAYEEIARALTNKFST-ETKIGLDISYSQLPD--FAEHSFRELGLSITRLK 104
           TVL+  +     +EI +AL NK+ T + K+ LD    QL D  +A  S +E    + +LK
Sbjct: 134 TVLLRYEGAGTDDEILKALDNKYDTLKDKLLLDALRKQLGDSEWALLSEQERQRRLMQLK 193

Query: 105 LNFDNLRQ 112
           L    LR+
Sbjct: 194 LEEKRLRR 201


>SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2557

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 48  TVLVVCQRINAYEEIARALTNKFST-ETKIGLDISYSQLPD--FAEHSFRELGLSITRLK 104
           TVL+  +     +EI +AL NK+ T + K+ LD    QL D  +A  S +E    + +LK
Sbjct: 860 TVLLRYEGAGTDDEILKALDNKYDTLKDKLLLDALRKQLGDSEWALLSEQERQRRLMQLK 919

Query: 105 LNFDNLRQ 112
           L    LR+
Sbjct: 920 LEEKRLRR 927


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.135    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,986,940
Number of Sequences: 59808
Number of extensions: 92463
Number of successful extensions: 220
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 217
Number of HSP's gapped (non-prelim): 9
length of query: 118
length of database: 16,821,457
effective HSP length: 73
effective length of query: 45
effective length of database: 12,455,473
effective search space: 560496285
effective search space used: 560496285
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 54 (25.8 bits)