GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000543-TA|BGIBMGA000543-PA|undefined
         (118 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53344-4|AAA96225.2|  575|Caenorhabditis elegans Hypothetical pr...    31   0.28 
AF003132-2|AAB54134.2|  568|Caenorhabditis elegans Hypothetical ...    27   4.5  
Z32680-4|CAA83601.1|  273|Caenorhabditis elegans Hypothetical pr...    26   7.9  
AJ312288-1|CAC41972.1|  278|Caenorhabditis elegans putative tran...    26   7.9  

>U53344-4|AAA96225.2|  575|Caenorhabditis elegans Hypothetical
           protein T07H6.5 protein.
          Length = 575

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 68  NKFSTETKIGLDISYSQLPDFAEHSFRELGLSITRLKLNFDNLRQ 112
           + FS E  +  +++Y+ +P +  H F   GLSI++  LN  N+ Q
Sbjct: 91  SSFSGEYDLDAEVAYNCIPGY--HKFNAKGLSISKCLLNRKNVAQ 133


>AF003132-2|AAB54134.2|  568|Caenorhabditis elegans Hypothetical
           protein F37E3.2 protein.
          Length = 568

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 57  NAYEEIARALTNKFSTETKIGLDISYSQLPDFAEHSF 93
           N  E + R L   F +   I +D+SY+Q+  FA H+F
Sbjct: 226 NLIENLHRLL---FVSPFLIHVDLSYNQITSFASHTF 259


>Z32680-4|CAA83601.1|  273|Caenorhabditis elegans Hypothetical
           protein C28A5.4 protein.
          Length = 273

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 82  YSQLPDFAEHSFRELGLSITRLKLNFDNLRQVAMK 116
           Y  LPD A  +  ELGLS T++K+ F N R    K
Sbjct: 126 YLALPDRAALA-HELGLSQTQVKIWFQNRRSKQKK 159


>AJ312288-1|CAC41972.1|  278|Caenorhabditis elegans putative
           transcription factor protein.
          Length = 278

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 82  YSQLPDFAEHSFRELGLSITRLKLNFDNLRQVAMK 116
           Y  LPD A  +  ELGLS T++K+ F N R    K
Sbjct: 131 YLALPDRAALA-HELGLSQTQVKIWFQNRRSKQKK 164


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.324    0.135    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,212,762
Number of Sequences: 27539
Number of extensions: 69332
Number of successful extensions: 221
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 220
Number of HSP's gapped (non-prelim): 4
length of query: 118
length of database: 12,573,161
effective HSP length: 73
effective length of query: 45
effective length of database: 10,562,814
effective search space: 475326630
effective search space used: 475326630
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 54 (25.8 bits)