GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000543-TA|BGIBMGA000543-PA|undefined
         (118 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   0.93 
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    21   3.8  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    20   6.6  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    20   6.6  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              20   6.6  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
          protein.
          Length = 693

 Score = 23.0 bits (47), Expect = 0.93
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 59 YEEIARALTNKFSTETKIGLDISYSQLPDFA 89
          Y  +A  + N+F  +T+  L +    LPD +
Sbjct: 41 YRSVATQVFNRFGDDTESKLPVKAITLPDLS 71


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 7/24 (29%), Positives = 16/24 (66%)

Query: 68  NKFSTETKIGLDISYSQLPDFAEH 91
           N F TET++   +  ++L +F+++
Sbjct: 90  NTFKTETQVNDSLKVTRLYEFSDN 113


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 94  RELGLSITRLKLNFDNLR 111
           R+LGL+  ++K+ F N R
Sbjct: 55  RDLGLTEAQIKIWFQNKR 72


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 94  RELGLSITRLKLNFDNLR 111
           R+LGL+  ++K+ F N R
Sbjct: 55  RDLGLNEAQIKIWFQNKR 72


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 69  KFSTETKIGLDISYSQLPDFAEHSFRELGLSITRLKLNFDN 109
           KF+   K    I Y+ L      +F+E+G+ +     N D+
Sbjct: 78  KFNVMDKKNGKIRYNLLKKVIPEAFKEIGVEMIDSCSNVDS 118


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.135    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,341
Number of Sequences: 429
Number of extensions: 799
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 118
length of database: 140,377
effective HSP length: 51
effective length of query: 67
effective length of database: 118,498
effective search space:  7939366
effective search space used:  7939366
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.1 bits)
S2: 39 (19.8 bits)