Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000543-TA|BGIBMGA000543-PA|undefined
(118 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g77470.1 68414.m09021 replication factor C 36 kDA, putative s... 27 4.4
At5g44820.1 68418.m05493 expressed protein similar to unknown pr... 26 5.8
At3g58710.2 68416.m06544 WRKY family transcription factor contai... 26 5.8
At3g58710.1 68416.m06543 WRKY family transcription factor contai... 26 5.8
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 26 5.8
At1g17260.1 68414.m02102 ATPase 10, plasma membrane-type, putati... 26 5.8
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 26 7.6
At4g36050.2 68417.m05132 endonuclease/exonuclease/phosphatase fa... 26 7.6
At4g36050.1 68417.m05131 endonuclease/exonuclease/phosphatase fa... 26 7.6
>At1g77470.1 68414.m09021 replication factor C 36 kDA, putative
similar to SWISS-PROT:P40937 activator 1 36 kDa subunit
(Replication factor C 36 kDa subunit, A1 36 kDa subunit,
RF-C 36 kDa subunit, RFC36) [Homo sapiens]
Length = 369
Score = 26.6 bits (56), Expect = 4.4
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 46 TGTVLVVCQRINAYEEIARALTNKFSTETKIGLDISYSQLPDFAEHSFRELGLSITRLKL 105
T T+L V +++ Y R + + + G+D+ Q+ DFA LG S +L L
Sbjct: 86 TSTILAVARKL--YGPKYRNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSSVKLVL 143
>At5g44820.1 68418.m05493 expressed protein similar to unknown
protein (pir||T04881)
Length = 367
Score = 26.2 bits (55), Expect = 5.8
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 49 VLVVCQRINAYEEIARALTNKFSTETKIGLDISYSQL---PDFAEHSFRELGLSITRLKL 105
V+VVC I A+E ++ TN + ET D S ++ PD+ + + + L L++
Sbjct: 142 VVVVCLDIKAFERCSQLHTNCYHIETS-ETDFSGEKVYNTPDYLKMMWARIDLLTQVLEM 200
Query: 106 NFD 108
F+
Sbjct: 201 GFN 203
>At3g58710.2 68416.m06544 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain
Length = 271
Score = 26.2 bits (55), Expect = 5.8
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 46 TGTVLVVCQRINAYEEIARALTNKFSTETKIGLDISYSQLPDFAEHSFRELG 97
+ VL ++ YEE LT + E GLD+S+ P + E+G
Sbjct: 142 SSVVLKTAKKEEEYEEEEEELTVTAAEEPPAGLDLSHVDSPLLLGGCYSEIG 193
>At3g58710.1 68416.m06543 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain
Length = 272
Score = 26.2 bits (55), Expect = 5.8
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 46 TGTVLVVCQRINAYEEIARALTNKFSTETKIGLDISYSQLPDFAEHSFRELG 97
+ VL ++ YEE LT + E GLD+S+ P + E+G
Sbjct: 143 SSVVLKTAKKEEEYEEEEEELTVTAAEEPPAGLDLSHVDSPLLLGGCYSEIG 194
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 56 INAYEEIARALTNKFSTETKIGLDISYSQLPDFAE 90
+NA E IA T S TK+G+D+ D +E
Sbjct: 461 LNAMEIIAALYTGHGSGNTKLGIDLEEGACKDVSE 495
>At1g17260.1 68414.m02102 ATPase 10, plasma membrane-type, putative
/ proton pump 10, putative / proton-exporting ATPase,
putative strong similarity to SP|Q43128 ATPase 10,
plasma membrane-type (EC 3.6.3.6) (Proton pump 10)
{Arabidopsis thaliana}; contains InterPro accession
IPR001757: ATPase, E1-E2 type; contains Pfam profile
PF00690: Cation transporter/ATPase, N-terminus
Length = 947
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 49 VLVVCQRINAYEEIARALTNKFSTETKIGLDISYSQLPDFAEHS 92
VL +CQ+ N + A+ ++F+ + L ++Y ++P+ + +S
Sbjct: 437 VLNLCQQKNEIAQRVYAIIDRFAEKGLRSLAVAYQEIPEKSNNS 480
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 25.8 bits (54), Expect = 7.6
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 47 GTVLVVCQRINAYEEIARALTNKFSTETKIGLDISYS 83
G ++V I A + ARAL NK TK LDI YS
Sbjct: 254 GFIMVSYCDIRAAQNAARALQNKLLRGTK--LDIRYS 288
>At4g36050.2 68417.m05132 endonuclease/exonuclease/phosphatase
family protein
Length = 609
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 66 LTNKFSTETKIGLDISYSQLPDFAEHS 92
L KF + + IS+ LPD EHS
Sbjct: 315 LVTKFKGSDHVPVFISFDDLPDIPEHS 341
>At4g36050.1 68417.m05131 endonuclease/exonuclease/phosphatase
family protein
Length = 408
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 66 LTNKFSTETKIGLDISYSQLPDFAEHS 92
L KF + + IS+ LPD EHS
Sbjct: 114 LVTKFKGSDHVPVFISFDDLPDIPEHS 140
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.324 0.135 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,068,514
Number of Sequences: 28952
Number of extensions: 65299
Number of successful extensions: 208
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 202
Number of HSP's gapped (non-prelim): 9
length of query: 118
length of database: 12,070,560
effective HSP length: 72
effective length of query: 46
effective length of database: 9,986,016
effective search space: 459356736
effective search space used: 459356736
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 54 (25.8 bits)
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