GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000542-TA|BGIBMGA000542-PA|IPR003959|AAA ATPase, central
region, IPR003593|AAA ATPase
         (631 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       29   0.073
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    29   0.073
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    29   0.073
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    26   0.68 
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    26   0.68 
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    25   1.2  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      25   1.6  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    24   2.8  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    23   8.4  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    23   8.4  

>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 29.5 bits (63), Expect = 0.073
 Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 5/126 (3%)

Query: 39  RKAMEAY-RFDSSALERAASAAKELERSRHAKDALELSKLQESTR---QQEQMAKIKEYE 94
           R+  + Y RF +  LE+       L R R  + A  L   +   +   Q  +M   KE  
Sbjct: 7   RRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELR 66

Query: 95  AAIEQAKVEQKKVDYEERRKTLQEETKQHQMRAQYQDQLAKKRYEEQLVQQQKSQEEILR 154
           A  E  +  +++ + +ER K  Q+E KQ ++  Q    + +  ++   +   KS    L 
Sbjct: 67  AVKEINEQARREREEQERHKQQQQE-KQQKIEQQTHSSIHQHHHDPMKMSLDKSGGSDLL 125

Query: 155 KQEESV 160
           K    V
Sbjct: 126 KAVSKV 131


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 29.5 bits (63), Expect = 0.073
 Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 5/126 (3%)

Query: 39  RKAMEAY-RFDSSALERAASAAKELERSRHAKDALELSKLQESTR---QQEQMAKIKEYE 94
           R+  + Y RF +  LE+       L R R  + A  L   +   +   Q  +M   KE  
Sbjct: 158 RRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELR 217

Query: 95  AAIEQAKVEQKKVDYEERRKTLQEETKQHQMRAQYQDQLAKKRYEEQLVQQQKSQEEILR 154
           A  E  +  +++ + +ER K  Q+E KQ ++  Q    + +  ++   +   KS    L 
Sbjct: 218 AVKEINEQARREREEQERHKQQQQE-KQQKIEQQTHSSIHQHHHDPMKMSLDKSGGSDLL 276

Query: 155 KQEESV 160
           K    V
Sbjct: 277 KAVSKV 282


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 29.5 bits (63), Expect = 0.073
 Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 5/126 (3%)

Query: 39  RKAMEAY-RFDSSALERAASAAKELERSRHAKDALELSKLQESTR---QQEQMAKIKEYE 94
           R+  + Y RF +  LE+       L R R  + A  L   +   +   Q  +M   KE  
Sbjct: 217 RRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELR 276

Query: 95  AAIEQAKVEQKKVDYEERRKTLQEETKQHQMRAQYQDQLAKKRYEEQLVQQQKSQEEILR 154
           A  E  +  +++ + +ER K  Q+E KQ ++  Q    + +  ++   +   KS    L 
Sbjct: 277 AVKEINEQARREREEQERHKQQQQE-KQQKIEQQTHSSIHQHHHDPMKMSLDKSGGSDLL 335

Query: 155 KQEESV 160
           K    V
Sbjct: 336 KAVSKV 341


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 26.2 bits (55), Expect = 0.68
 Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 5/114 (4%)

Query: 33  NLSKSERKAMEAYRFDSSALERAASAAKELERSRHAKDALELSKLQESTRQQEQMAKIKE 92
           N  K  +   + +  D  ALE+ A + KE   +   +  LE +   E     E      +
Sbjct: 151 NRVKYNQNYSKVFGNDEKALEQIAKSEKEPSLTDLVQRWLERTPGLEL----EGFNFWGK 206

Query: 93  YEAAIEQAKVEQKKVDYEERRKTLQE-ETKQHQMRAQYQDQLAKKRYEEQLVQQ 145
           Y+ A+E+   EQK++  +E  +TL+  +    + R +  + + K    E L+ +
Sbjct: 207 YQKAVEKLLTEQKELAEKEEAETLKRYKLNDLEKRREVYESIFKVEVHEALMSR 260


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 26.2 bits (55), Expect = 0.68
 Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 5/114 (4%)

Query: 33  NLSKSERKAMEAYRFDSSALERAASAAKELERSRHAKDALELSKLQESTRQQEQMAKIKE 92
           N  K  +   + +  D  ALE+ A + KE   +   +  LE +   E     E      +
Sbjct: 151 NRVKYNQNYSKVFGNDEKALEQIAKSEKEPSLTDLVQRWLERTPGLEL----EGFNFWGK 206

Query: 93  YEAAIEQAKVEQKKVDYEERRKTLQE-ETKQHQMRAQYQDQLAKKRYEEQLVQQ 145
           Y+ A+E+   EQK++  +E  +TL+  +    + R +  + + K    E L+ +
Sbjct: 207 YQKAVEKLLTEQKELAEKEEAETLKRYKLNDLEKRREVYESIFKVEVHEALMSR 260


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 92  EYEAAIEQAKVEQKKVDYEERRKTLQE-ETKQHQMRAQYQDQLAKKRYEEQLVQQ 145
           +Y+ A+E+   EQK++  +E  +TL+  +    + R +  + + K    E L+ +
Sbjct: 46  KYQKAVEKLLTEQKELAEKEEAETLKRYKLNDLEKRREVYESIFKVEVHEALMSR 100


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 406 VLVFIDEADAFLRKRSSEKISED 428
           V VF DE D    KRSSE ++E+
Sbjct: 18  VKVFKDEGDGEDEKRSSENLTEE 40


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 526 SGRALSKLGVAWQAAAYASDDGRLTEQMCIDICD 559
           S + LS+L ++W + +  S  G+L    C+   D
Sbjct: 367 SAQTLSELDLSWNSISSLSHGGQLARFKCLSWLD 400


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 22.6 bits (46), Expect = 8.4
 Identities = 7/15 (46%), Positives = 12/15 (80%)

Query: 542 YASDDGRLTEQMCID 556
           Y  +DG++TE++C D
Sbjct: 56  YECNDGQITEKLCPD 70


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 8.4
 Identities = 14/38 (36%), Positives = 18/38 (47%)

Query: 202 DINLEQIRLKAAENRVTILESIKTAGSVVGSGLNALVT 239
           DI+ E    K  EN +T+L  IK A    G  L   V+
Sbjct: 142 DIDWEYPEAKDKENFITLLREIKEAFQPKGHLLTIAVS 179


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.128    0.347 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,950
Number of Sequences: 317
Number of extensions: 3680
Number of successful extensions: 20
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 13
length of query: 631
length of database: 114,650
effective HSP length: 61
effective length of query: 570
effective length of database: 95,313
effective search space: 54328410
effective search space used: 54328410
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)