GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000541-TA|BGIBMGA000541-PA|IPR007087|Zinc finger,
C2H2-type, IPR006629|LPS-induced tumor necrosis factor alpha factor
         (133 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47069-3|CAE17781.1|  141|Caenorhabditis elegans Hypothetical pr...    35   0.022
U67956-1|AAB07690.2|  157|Caenorhabditis elegans Hypothetical pr...    34   0.029
AL110500-18|CAB54478.1|  118|Caenorhabditis elegans Hypothetical...    33   0.051
AL032626-23|CAE17974.1|   88|Caenorhabditis elegans Hypothetical...    32   0.12 
AL110500-20|CAI79282.1|  110|Caenorhabditis elegans Hypothetical...    28   1.9  
AL032627-14|CAA21549.1|  386|Caenorhabditis elegans Hypothetical...    27   4.5  

>Z47069-3|CAE17781.1|  141|Caenorhabditis elegans Hypothetical
           protein F36G3.3 protein.
          Length = 141

 Score = 34.7 bits (76), Expect = 0.022
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 69  CPSCHAEINTSTQTKPGLIAYITXXXXXXXXXXXXXXXXXXXXDSCMDVHHKCPHCDTYL 128
           CP C  +I T T++  GL+ +I                      SC D+ H CP+C   +
Sbjct: 77  CPYCRMDIVTRTKSVYGLLTWIFFAALFLFGCWCCCFLPFCLR-SCKDIIHTCPNCRAMI 135

Query: 129 GRYRR 133
           G +RR
Sbjct: 136 GVHRR 140


>U67956-1|AAB07690.2|  157|Caenorhabditis elegans Hypothetical
           protein F16F9.1 protein.
          Length = 157

 Score = 34.3 bits (75), Expect = 0.029
 Identities = 12/22 (54%), Positives = 14/22 (63%)

Query: 112 DSCMDVHHKCPHCDTYLGRYRR 133
           DSC D HH CP C+  LG  +R
Sbjct: 134 DSCKDAHHYCPRCNALLGIKKR 155


>AL110500-18|CAB54478.1|  118|Caenorhabditis elegans Hypothetical
           protein Y87G2A.18 protein.
          Length = 118

 Score = 33.5 bits (73), Expect = 0.051
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 112 DSCMDVHHKCPHCDTYLGRYRR 133
           D  +DV+H CP C  +LGR+ R
Sbjct: 96  DQLLDVNHSCPACKKFLGRFNR 117


>AL032626-23|CAE17974.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37D8A.26 protein.
          Length = 88

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 11/19 (57%), Positives = 15/19 (78%)

Query: 115 MDVHHKCPHCDTYLGRYRR 133
           MDVHH+CP+C+  LG+  R
Sbjct: 69  MDVHHRCPNCNKSLGKRDR 87


>AL110500-20|CAI79282.1|  110|Caenorhabditis elegans Hypothetical
           protein Y87G2A.19 protein.
          Length = 110

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 116 DVHHKCPHCDTYLGRYRR 133
           D  H CP C  ++G YRR
Sbjct: 88  DAEHYCPSCRAWIGTYRR 105


>AL032627-14|CAA21549.1|  386|Caenorhabditis elegans Hypothetical
           protein Y41C4A.11 protein.
          Length = 386

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 17/66 (25%), Positives = 22/66 (33%), Gaps = 2/66 (3%)

Query: 68  ICPSCHAEINTSTQTKPGLIAYITXXXXXXXXXXXXXXXXXXXXDSCMDVHHKCPHCDTY 127
           +CP C   I TS  T  G+  ++                     D   DV H CP+C   
Sbjct: 35  VCPKCQTTIMTSVTTHIGMCWWLICFFGTFLFCWPILICLCF--DVSKDVDHNCPNCGLL 92

Query: 128 LGRYRR 133
           L    R
Sbjct: 93  LATSNR 98


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.135    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,040,358
Number of Sequences: 27539
Number of extensions: 32074
Number of successful extensions: 77
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 70
Number of HSP's gapped (non-prelim): 8
length of query: 133
length of database: 12,573,161
effective HSP length: 74
effective length of query: 59
effective length of database: 10,535,275
effective search space: 621581225
effective search space used: 621581225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)