GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000541-TA|BGIBMGA000541-PA|IPR007087|Zinc finger,
C2H2-type, IPR006629|LPS-induced tumor necrosis factor alpha factor
         (133 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putat...    29   1.0  
At1g66630.1 68414.m07571 seven in absentia (SINA) family protein...    26   9.7  

>At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putative
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 366

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 114 CMDVHHKCPHCDTYLGRYR 132
           C +V +KCP+C   +G YR
Sbjct: 81  CTNVSNKCPYCSLAIGNYR 99


>At1g66630.1 68414.m07571 seven in absentia (SINA) family protein
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 303

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 114 CMDVHHKCPHCDTYLGRYR 132
           C  V +KCP+C   +G +R
Sbjct: 74  CKKVKYKCPYCSLRIGFFR 92


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.135    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,911,901
Number of Sequences: 28952
Number of extensions: 29865
Number of successful extensions: 48
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46
Number of HSP's gapped (non-prelim): 2
length of query: 133
length of database: 12,070,560
effective HSP length: 74
effective length of query: 59
effective length of database: 9,928,112
effective search space: 585758608
effective search space used: 585758608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)