Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000540-TA|BGIBMGA000540-PA|IPR000195|RabGAP/TBC
         (894 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    27   0.43 
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    23   7.0  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   7.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   7.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   7.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   7.0  

>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 27.5 bits (58), Expect = 0.43
 Identities = 16/87 (18%), Positives = 40/87 (45%), Gaps = 2/87 (2%)

Query: 432 LAYSVKVNPKKMKKLEKEYTVIKTKEQGDIA--VLRCLRQENRLLKQRVXXXXXXXXXXX 489
           +AY +  NP   KKL+KE  +   +  G I+  VL+ ++  ++++ + +           
Sbjct: 291 MAYELATNPHVQKKLQKEIDLTLQENHGKISYNVLQSMKYLDQVVCESLRLWPPAPQTDR 350

Query: 490 XXXVRGQVDRAEGEEETFALDREVQAL 516
                  ++ ++  E TF ++++   +
Sbjct: 351 LCNKNFVIEASKPHERTFTVEKDTMVM 377


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 7/27 (25%), Positives = 17/27 (62%)

Query: 823 SDRVRELQEQVAELKAEIMRLEAWKSR 849
           + ++R+L  +V ++K ++  L+ W  R
Sbjct: 288 NQKLRDLNREVDQIKQDVEDLKRWSDR 314


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 706 EALTELKELRLKVMELETQVQVSTNQLRRQDEEARLLRENLDAALQRER 754
           E L   ++L +  M     +  S    RR+D+EA +  E+LD  +Q+E+
Sbjct: 487 ERLARTEKLFVTPMYEGLLIDQSLGMNRRRDDEADVKTEDLD-EIQKEK 534


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 706 EALTELKELRLKVMELETQVQVSTNQLRRQDEEARLLRENLDAALQRER 754
           E L   ++L +  M     +  S    RR+D+EA +  E+LD  +Q+E+
Sbjct: 487 ERLARTEKLFVTPMYEGLLIDQSLGMNRRRDDEADVKTEDLD-EIQKEK 534


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 706 EALTELKELRLKVMELETQVQVSTNQLRRQDEEARLLRENLDAALQRER 754
           E L   ++L +  M     +  S    RR+D+EA +  E+LD  +Q+E+
Sbjct: 487 ERLARTEKLFVTPMYEGLLIDQSLGMNRRRDDEADVKTEDLD-EIQKEK 534


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 706 EALTELKELRLKVMELETQVQVSTNQLRRQDEEARLLRENLDAALQRER 754
           E L   ++L +  M     +  S    RR+D+EA +  E+LD  +Q+E+
Sbjct: 487 ERLARTEKLFVTPMYEGLLIDQSLGMNRRRDDEADVKTEDLD-EIQKEK 534


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.130    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,898
Number of Sequences: 317
Number of extensions: 5409
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 10
length of query: 894
length of database: 114,650
effective HSP length: 63
effective length of query: 831
effective length of database: 94,679
effective search space: 78678249
effective search space used: 78678249
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)