Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000539-TA|BGIBMGA000539-PA|undefined
         (634 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   3.7  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    23   6.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   8.5  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 10/45 (22%), Positives = 20/45 (44%)

Query: 71   KDLVVGSNTELRTKLNRMDKKVTINQRPNLNLPPPSANVPTPAVT 115
            K + V  +  +  K+   D   T   + ++ LP  +  +P P +T
Sbjct: 1295 KKVTVSPSASVPAKIASFDDTFTTTYKEDVTLPCLAVGLPPPVIT 1339


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 138 DNRTNPYYFNSDLNKSKTLTQEPFNLPKVTETDVTSYLPSDLTVP 182
           D R NP+ F +  +    L +   +L + T T       S LT+P
Sbjct: 508 DERGNPWLFRNQKDMFIELDRFAVSLKQGTNTITRHSTESSLTIP 552


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 77   SNTELRTKLNRMDKKVTINQRPNLNLPPPSANVPTPAVTSTVVKSEPNQ 125
            + T  RT   R     T  +    N P     +P PAV    V  +P+Q
Sbjct: 1054 TTTTRRTTTTRPTTTSTTTRPTTTNWPTQGTTIPPPAVVMPEV-DKPSQ 1101


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.309    0.127    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,595
Number of Sequences: 317
Number of extensions: 5871
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 3
length of query: 634
length of database: 114,650
effective HSP length: 61
effective length of query: 573
effective length of database: 95,313
effective search space: 54614349
effective search space used: 54614349
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 46 (22.6 bits)