Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000539-TA|BGIBMGA000539-PA|undefined
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0864 - 28852252-28854582 33 0.69
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 33 0.91
03_01_0144 - 1152280-1152858,1154684-1154872,1155473-1155640 32 1.2
01_05_0758 + 24954701-24954793,24954907-24955086,24955676-249558... 31 2.8
02_04_0448 - 23001579-23001683,23001783-23002382,23002479-230026... 31 3.7
09_01_0184 + 2693576-2693578,2694157-2694952,2695169-2695249,269... 30 4.9
05_07_0267 + 28818396-28818513,28819292-28819697,28819796-288199... 30 6.4
08_01_0771 - 7464383-7464655,7464901-7464915,7465098-7465418 29 8.5
06_03_1490 + 30497980-30498102,30499034-30500156,30500914-305011... 29 8.5
04_04_1125 + 31085106-31085714 29 8.5
04_03_0272 + 13725262-13725443,13726036-13726114,13726329-137263... 29 8.5
03_05_0406 + 23895593-23896141 29 8.5
>04_04_0864 - 28852252-28854582
Length = 776
Score = 33.1 bits (72), Expect = 0.69
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 14/118 (11%)
Query: 327 YQLGEADLRE------QSPIP-KLMLQKSNRNRRCTETSTRRIYDPAIPETSNKPDNKVN 379
Y +G+AD E +P+ + + SN R T +S + PAI +K
Sbjct: 632 YDIGQADYLEFLCTQHMTPMQLRTFTKNSNMTCRHTFSSASDLNYPAISVVFADQPSKAL 691
Query: 380 TDRFSSTN------TFHDTKIKKDETKTVIVEEPDLDIVKTEPEIDWRTYASTKAGNE 431
T R + TN T+H K+ K + VIVE L V T ++ ++ +TKA +
Sbjct: 692 TVRRTVTNVGPPSSTYH-VKVTKFKGADVIVEPNTLHFVSTNQKLSYKVTVTTKAAQK 748
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 32.7 bits (71), Expect = 0.91
Identities = 34/159 (21%), Positives = 71/159 (44%), Gaps = 12/159 (7%)
Query: 258 KTEKPETSKPAERPKKYERTNYSVHKKSKMINTYGKTKGLNAFKKTTQVTGSLSERLKL- 316
K + E + AE+ K ++ H K K + + ++ TQ + S SE
Sbjct: 147 KLRRTEDNSAAEKRVKTQKP--PTHDKQKKKRKHYSSDSYSSDYSDTQSSDSGSESESYS 204
Query: 317 ---IDTTPTGEDPYQLGEADLREQ--SPIPKLMLQKSNRNRRCTETSTRRIYDPAIPETS 371
+DT+ + + ++ ++ +++ S K +K+ R R T+ ++R Y + ++
Sbjct: 205 SSSLDTSSSSDHRHKRRKSSKKDKHRSAKGKSKHKKTKRKSRGTKRKSKRSYRSSSDDSD 264
Query: 372 NKPDNKVNTDRFS----STNTFHDTKIKKDETKTVIVEE 406
+ ++D S +T T H +K D TKT+ +E+
Sbjct: 265 SSKTGGSSSDSESEGRRTTRTKHSSKKDPDNTKTISLEK 303
>03_01_0144 - 1152280-1152858,1154684-1154872,1155473-1155640
Length = 311
Score = 32.3 bits (70), Expect = 1.2
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 74 VVGSNTELRTKLNRMDKKVTINQRPNLNLPPPSANV 109
+VG N + R D V++ Q N NLPPPSANV
Sbjct: 119 LVGGNA-YQVPGGRRDGNVSVAQETNGNLPPPSANV 153
>01_05_0758 +
24954701-24954793,24954907-24955086,24955676-24955870,
24955982-24956089,24956211-24956288,24956383-24956464,
24956624-24956783,24956877-24957179,24957295-24957513,
24957598-24958057,24958175-24958240,24958332-24958511
Length = 707
Score = 31.1 bits (67), Expect = 2.8
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 369 ETSNKPDNKVNTDRFSSTNTFHDTKIKKDETKTVIVEEPDLDIVKTEPEIDWRTYAST-- 426
E S K ++ ++ ++ S++ T H+TK+K D T+ V E D V E + Y T
Sbjct: 166 EISKKEEDIIDIEQQSNSLTVHETKLKVDLTEYVEKHEFVFDAVLDEDVSNDEVYRETVE 225
Query: 427 ----KAGNETSLCDFSYGE 441
N T F+YG+
Sbjct: 226 PVVPAIFNRTKATCFAYGQ 244
>02_04_0448 -
23001579-23001683,23001783-23002382,23002479-23002628,
23002788-23003015,23003188-23003302,23003392-23004659,
23006621-23006692
Length = 845
Score = 30.7 bits (66), Expect = 3.7
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Query: 98 PNLNLPPPSANVPTPAVTSTVVKSEPNQVMFNSLTELLLPDNRTNPYYFNSDLNKSKTLT 157
P + PP+ NVP ++V S + ++LTE L + DLNK + L
Sbjct: 724 PAVTPVPPTVNVPAGNAPASVGASSSDHHGIDNLTEEKLLKELEEMGFRQVDLNK-EILR 782
Query: 158 QEPFNLPKVTE--TDVTSYLPSDLTVPPMSILDTNIN 192
Q +NL + + V+ + P + M DT IN
Sbjct: 783 QNKYNLEQSVDDLCGVSEWDPLLEELQEMGFEDTEIN 819
>09_01_0184 +
2693576-2693578,2694157-2694952,2695169-2695249,
2695454-2695793,2695799-2696258,2696404-2696526,
2696532-2697266
Length = 845
Score = 30.3 bits (65), Expect = 4.9
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 256 ATKTEKPETSKPAERPK-KYERTNYSVHKKSKMI-NTYGKTK 295
A K E+P KP+ PK K ERTN K++ + + KTK
Sbjct: 541 AKKLEQPAQKKPSSAPKPKKERTNMDASKRAAYVKKIHEKTK 582
>05_07_0267 +
28818396-28818513,28819292-28819697,28819796-28819973,
28820414-28820553,28820629-28821874,28821952-28822052,
28822170-28822314,28822755-28822823,28822910-28822955,
28823049-28823422,28823622-28823701,28823813-28823948,
28824199-28824358,28824582-28824664,28825417-28825545
Length = 1136
Score = 29.9 bits (64), Expect = 6.4
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 137 PDNRTNPYYFNSDLNKSKTLTQEPFNLPKVTETDVTSYLPSDLTVPPMSI 186
P+ + + NS N KTL+ E P+ E+D S P+D P +S+
Sbjct: 901 PEQNEHSFIINSG-NSKKTLSSETDYPPQSLESDGYSVAPNDWMAPNLSV 949
>08_01_0771 - 7464383-7464655,7464901-7464915,7465098-7465418
Length = 202
Score = 29.5 bits (63), Expect = 8.5
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 278 NYSVHKKSKMINTYGKTKGLNAFKKTTQVTGSLSERLKLIDTTPTGEDPYQLGEADL 334
+Y V K++ I G T G N K + T + + K D TPT E + AD+
Sbjct: 105 HYLVQKEAVHIMLCGNTTGWNQKMKRSSKTARRNHKKKDRDLTPTNEGIHLTRSADI 161
>06_03_1490 +
30497980-30498102,30499034-30500156,30500914-30501132,
30501228-30501454,30501810-30501884,30502250-30502321,
30502765-30502863,30502975-30503046,30503131-30503245,
30503455-30503523,30503625-30503952,30504320-30504437,
30504522-30505448
Length = 1188
Score = 29.5 bits (63), Expect = 8.5
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 103 PPPSANVPTPAVTSTVVKSEPNQVMFNSLTELLLPDNRTNPYYFNSDLNKSKTLTQEPFN 162
P P P V S + P Q FNS+ P S+ N+S Q P+
Sbjct: 319 PKPLQTGPMQGVASLPSQPAPKQNQFNSMPSAPAPMGSFPGGQIPSNTNQS----QAPW- 373
Query: 163 LPKVTETDVTSYL 175
PK+T+ DV Y+
Sbjct: 374 -PKITQADVRKYM 385
>04_04_1125 + 31085106-31085714
Length = 202
Score = 29.5 bits (63), Expect = 8.5
Identities = 17/48 (35%), Positives = 17/48 (35%)
Query: 483 PADKTKKRVGRTPSVMTPTIPFEEPLAPITPVLPVVNAAPDVPIEMPT 530
PA T TP TPT P P P P A P P PT
Sbjct: 53 PATPTTPPTPWTPPPATPTPPTPTPWTPTPATPPPTPATPATPTTPPT 100
>04_03_0272 +
13725262-13725443,13726036-13726114,13726329-13726390,
13726575-13726700,13726780-13726879,13727143-13727226,
13727328-13727462
Length = 255
Score = 29.5 bits (63), Expect = 8.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 50 RQTLTLDKEVEISTHCVVSEEKDLVVGSNTELRTKLN 86
R L +VE+S H + +++ LV N+ELR K N
Sbjct: 163 RDLQLLQNQVEMSLHSIRNKKGSLVQKENSELRKKFN 199
>03_05_0406 + 23895593-23896141
Length = 182
Score = 29.5 bits (63), Expect = 8.5
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Query: 252 PKSSATKTEKPETSKPAERPKKYERTNYSVHKKSKMINTYGKTKGLNAFKKTTQVTGSLS 311
PK+ K +KPE P E + +Y+VH+ +IN G + V G+++
Sbjct: 81 PKTDGPKDDKPEEETPLEFENFQGQIDYAVHQ--ALINQSGVLVNTLTNIIKSVVDGTIA 138
Query: 312 ERLKLIDT-TPTGEDPYQLGEADLREQSPIPKLMLQK 347
E+ T P G P E ++Q PI ++L++
Sbjct: 139 EQQVRGPTFLPNGVFP-NYRELITKKQQPIGGVILEQ 174
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.309 0.127 0.360
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,410,216
Number of Sequences: 37544
Number of extensions: 668328
Number of successful extensions: 1606
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1599
Number of HSP's gapped (non-prelim): 15
length of query: 634
length of database: 14,793,348
effective HSP length: 87
effective length of query: 547
effective length of database: 11,527,020
effective search space: 6305279940
effective search space used: 6305279940
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 63 (29.5 bits)
- SilkBase 1999-2023 -