GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000539-TA|BGIBMGA000539-PA|undefined
         (634 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              29   0.12 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       26   0.82 
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    26   1.1  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    24   3.3  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    24   3.3  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    24   4.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   5.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 29.1 bits (62), Expect = 0.12
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 45   ESADRRQTLTLDKEVEISTHCVVSEEKDLV-VGSNTELRTKLNRMDKKVTINQRPNLNLP 103
            E+++  +T   D  V  ST+    E   +V +  +  +  K+   D K T   + ++ LP
Sbjct: 1238 EASELDKTRRYDFWVTASTNIGEGEASKIVALAPSVRVPAKIASFDDKFTATYKEDVKLP 1297

Query: 104  PPSANVPTPAVT 115
              +  VP P VT
Sbjct: 1298 CLAVGVPAPEVT 1309


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 26.2 bits (55), Expect = 0.82
 Identities = 12/56 (21%), Positives = 24/56 (42%)

Query: 147 NSDLNKSKTLTQEPFNLPKVTETDVTSYLPSDLTVPPMSILDTNINLGDNFNMIEN 202
           N +  + KT      N  +  +     Y+P +L     S+ +  + +G NF+  +N
Sbjct: 126 NRNDRRKKTFAAREDNDEEEAQKPKEQYIPPELPNDEKSLFENGVEIGINFDKYDN 181


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 57  KEVEISTHCVVSEEKDLVVGSNTELRTKLNRMDKKVTINQRPNLN 101
           KE+  +THCV + + D +   NT  +   N+ + K   N + N N
Sbjct: 406 KELIRNTHCVNNNQNDNI--QNTNNQNDNNQKNNKKNANNQKNNN 448


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.2 bits (50), Expect = 3.3
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 446 IHIPSIDSMEFQDLFAPDASLNLDNLTAADFGITDKPPADKTKKRV 491
           ++IP  D + F  L  P   +NLD+LT     ++D P  D T+  V
Sbjct: 301 LYIPESDLVTF--LCYPSV-MNLDDLTRRSLYLSDIPLHDATRDLV 343


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.2 bits (50), Expect = 3.3
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 446 IHIPSIDSMEFQDLFAPDASLNLDNLTAADFGITDKPPADKTKKRV 491
           ++IP  D + F  L  P   +NLD+LT     ++D P  D T+  V
Sbjct: 301 LYIPESDLVTF--LCYPSV-MNLDDLTRRSLYLSDIPLHDATRDLV 343


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 12/22 (54%), Positives = 13/22 (59%)

Query: 147 NSDLNKSKTLTQEPFNLPKVTE 168
           N  +N  KTLTQEP N  K  E
Sbjct: 132 NHLVNAFKTLTQEPKNTNKFLE 153


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 5.8
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 252  PKSSATKTEKPETSKPAERPKKYERTNY 279
            P+S      KP T     RPK+ +  NY
Sbjct: 1016 PQSQEANKPKPATGGKGTRPKRGKYRNY 1043


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.309    0.127    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,296
Number of Sequences: 429
Number of extensions: 7721
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 7
length of query: 634
length of database: 140,377
effective HSP length: 62
effective length of query: 572
effective length of database: 113,779
effective search space: 65081588
effective search space used: 65081588
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 47 (23.0 bits)