Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000539-TA|BGIBMGA000539-PA|undefined
(634 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g50910.1 68416.m05574 expressed protein 38 0.015
At5g66620.1 68418.m08397 LIM domain-containing protein contains ... 32 1.3
At2g43420.1 68415.m05396 3-beta hydroxysteroid dehydrogenase/iso... 31 1.8
At5g46750.1 68418.m05759 human Rev interacting-like family prote... 31 3.1
At2g24310.1 68415.m02906 expressed protein 31 3.1
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 30 4.1
At4g18600.1 68417.m02755 expressed protein 30 4.1
At3g51340.1 68416.m05620 aspartyl protease family protein contai... 30 4.1
At1g79480.1 68414.m09263 hypothetical protein low similarity to ... 30 4.1
At5g27000.1 68418.m03221 kinesin motor protein-related non-conse... 30 5.4
At5g03100.1 68418.m00258 F-box family protein contains F-box dom... 30 5.4
At3g07210.1 68416.m00860 expressed protein predicted using genef... 30 5.4
At2g37010.1 68415.m04539 ABC transporter family protein contains... 30 5.4
At1g68480.1 68414.m07823 zinc finger (C2H2 type) family protein ... 30 5.4
At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 ... 29 7.1
At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t... 29 7.1
At2g23700.1 68415.m02830 expressed protein contains Pfam profile... 29 7.1
At1g72160.1 68414.m08343 SEC14 cytosolic factor family protein /... 29 7.1
At5g12930.1 68418.m01483 expressed protein 29 9.4
At2g43400.1 68415.m05394 electron transfer flavoprotein-ubiquino... 29 9.4
>At3g50910.1 68416.m05574 expressed protein
Length = 447
Score = 38.3 bits (85), Expect = 0.015
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 448 IPSIDSMEFQDLFAPDASLNLDNLTAADFGITDKPPADKTKKRVGRTPSVMTPTIPFEEP 507
+P+ ++ + P AS +++++ + KPP K +K G+ P+ T T P P
Sbjct: 1 MPTFSAIALDRMLEPGASTSVESVPSTTNLFYSKPPISKLEKGKGKLPNERTVTRPLMSP 60
Query: 508 LAPITP-VLPVVNAAPDVP 525
TP +P+ N+ P
Sbjct: 61 ALYATPDAIPLPNSPSSFP 79
>At5g66620.1 68418.m08397 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 644
Score = 31.9 bits (69), Expect = 1.3
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 389 FHDTKIKKDETKTVIVEEPDLDIVKTEPEIDWRTYASTKA 428
F D ++KKDE +IV+E L++V++ P ++ ST+A
Sbjct: 203 FEDEQVKKDEQLALIVQE-SLNMVESPPRLEENNNISTRA 241
>At2g43420.1 68415.m05396 3-beta hydroxysteroid
dehydrogenase/isomerase family protein contains Pfam
profile PF01073 3-beta hydroxysteroid
dehydrogenase/isomerase domain; similar to
NAD(P)-dependent steroid dehydrogenase from Homo sapiens
[SP|Q15738], Mus musculus [SP|Q9R1J0]
Length = 561
Score = 31.5 bits (68), Expect = 1.8
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 423 YASTKAGNETSLCDFSYGENPNNIHIPSIDSMEFQDLFAPDASLNLDNLTAADF 476
YA G+ ++ DF+Y EN ++ HI ++ +++ Q F + NL F
Sbjct: 212 YAKFILGSGENISDFTYSENVSHAHICAVKALDSQMEFVAGKEFFITNLKPVRF 265
>At5g46750.1 68418.m05759 human Rev interacting-like family protein
/ hRIP family protein contains Pfam profile PF01412:
Putative GTP-ase activating protein for Arf
Length = 402
Score = 30.7 bits (66), Expect = 3.1
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 252 PKSSATKTEKPETSKPAERPKKYERTNYSVHKKSKMINTYGKTKGLNAFKKTTQVTGSLS 311
PK S+ K E S P K ++ S KK + GKT GL A K TT+ +L
Sbjct: 155 PKESSLKQEAAVVSSP----KASQKVVASTFKKPLVSRKSGKTGGLGARKLTTKSKDNLY 210
Query: 312 ER 313
E+
Sbjct: 211 EQ 212
>At2g24310.1 68415.m02906 expressed protein
Length = 322
Score = 30.7 bits (66), Expect = 3.1
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 285 SKMINTYGKTKGLNAFKKTTQVTGSLSERLKLIDTTPTGEDP 326
S +N LN+ TT V+ S SE++++ +TTP P
Sbjct: 154 SPSVNARVSESNLNSSSSTTPVSVSPSEKVRVFETTPVSASP 195
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 30.3 bits (65), Expect = 4.1
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 482 PPADKTKKRVGRTPSVMTPTIPFEEPLAPITPVLPV---VNAAPDVP 525
PP+ T +PS TP+ P P P TP P+ N+ P +P
Sbjct: 536 PPSTPTSPGSPPSPSSPTPSSPIPSPPTPSTPPTPISPGQNSPPIIP 582
>At4g18600.1 68417.m02755 expressed protein
Length = 1907
Score = 30.3 bits (65), Expect = 4.1
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 320 TPTGEDPYQLGEADLR--EQSPIPKLMLQKSNRNRRCTETSTRRIYDPAIPETSNKPDNK 377
+PT P + + E SP+PKL L+ + R E + +PE SN D
Sbjct: 1723 SPTSSPPVEHMKISFNPIEASPVPKLKLRIPCQPRYNGENADMFPSFQLVPEASNSDDGD 1782
Query: 378 VNTDRFSSTN 387
N+D F ++
Sbjct: 1783 DNSDTFCQSS 1792
>At3g51340.1 68416.m05620 aspartyl protease family protein contains
Eukaryotic and viral aspartyl proteases active site,
PROSITE:PS00141
Length = 518
Score = 30.3 bits (65), Expect = 4.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 98 PNLNLPPPSANVPTPAVTSTVVKSEPNQVMFNSLT 132
P + PPPS + P PA ++T +P NS T
Sbjct: 461 PEIEAPPPSVSTPPPAASATPPTIDPRNSTRNSGT 495
>At1g79480.1 68414.m09263 hypothetical protein low similarity to
beta-1,3-glucanase-like protein GI:9758115 from
[Arabidopsis thaliana]
Length = 356
Score = 30.3 bits (65), Expect = 4.1
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 98 PNLNLPPPSANVPTPAVTSTVVKSEPNQVMFNSLTELLLPDNRTNPYYFNSDLNKSKTLT 157
P L+ PP +P P +S+ S PN S + PD+ +NP NS+ N T+
Sbjct: 75 PGLSPPPGPITLPNPPDSSSNPNSNPNPP--ESSSNPNPPDSSSNP---NSNPNPPVTVP 129
Query: 158 QEPFNLPKVTETDVTSYLPSDLTVPPMSILDTN 190
P + D +S P+ PP S + N
Sbjct: 130 NPPESSSNPNPPDSSSN-PNSNPNPPESSSNPN 161
>At5g27000.1 68418.m03221 kinesin motor protein-related
non-consensus AT donor splice site at exon 12;
non-consensus AC acceptor splice site at exon 13
Length = 987
Score = 29.9 bits (64), Expect = 5.4
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 260 EKPETSKPAERPKKYERTNYSVHKKSKMINTYGKTKGLNAFKKTTQVT 307
E E S P KK++RTN+ H++ K++ + K + K+T T
Sbjct: 297 EAEENSPPQVVEKKFQRTNFEHHEEQKIL--LNQQKHIQELKQTLYTT 342
>At5g03100.1 68418.m00258 F-box family protein contains F-box domain
Pfam:PF00646
Length = 307
Score = 29.9 bits (64), Expect = 5.4
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 13/87 (14%)
Query: 107 ANVPTPAVTSTVVKSEPNQVMFNSLTELLLPDNRTNPYYFNSDLNKSKTLTQEPFNLPKV 166
AN PT T V S+ + ++ + + NR +P LNK T ++ PK+
Sbjct: 24 ANTPTKLAIRTSVLSKRWKHVWYETPSISIVCNRVDP----DSLNK----TLSSYSTPKI 75
Query: 167 TETDVTSYLPSDLTVPPMSILDTNINL 193
DVT + D+TVP +DT INL
Sbjct: 76 KSFDVT--ISRDVTVPE---IDTWINL 97
>At3g07210.1 68416.m00860 expressed protein predicted using
genefinder
Length = 547
Score = 29.9 bits (64), Expect = 5.4
Identities = 16/71 (22%), Positives = 31/71 (43%)
Query: 329 LGEADLREQSPIPKLMLQKSNRNRRCTETSTRRIYDPAIPETSNKPDNKVNTDRFSSTNT 388
L E + + P+ +LM R CT + RR++ P P + D+ +++
Sbjct: 241 LDEHTTKPKLPLIRLMSSGQKSERSCTSFTMRRVFKPNDSADVGTPSSSNTRDQTHPSSS 300
Query: 389 FHDTKIKKDET 399
+ K++ET
Sbjct: 301 IAAEEEKEEET 311
>At2g37010.1 68415.m04539 ABC transporter family protein contains
ABC transporter domain, Pfam:PF00005
Length = 1063
Score = 29.9 bits (64), Expect = 5.4
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 13/106 (12%)
Query: 2 NSRSSVNETNLV-NYSADLSTLNQLDTKESLLSFPFDHIYACHSESADRRQTLTLDKEVE 60
N ++ V+ TNL+ +L T+ + D L Y + D + DK ++
Sbjct: 40 NPKALVSVTNLIYTRLQNLKTVLKADVDRDLG-------YCIKNLKGDWNEAFNFDKNLD 92
Query: 61 ISTHCVVSEEKDLVVG--SNTELR---TKLNRMDKKVTINQRPNLN 101
++CV + DL + S E++ + R D+ T++ +PN+N
Sbjct: 93 FLSNCVKKNDGDLTLRLCSAAEIKFYFSSFVRRDEATTVHVKPNIN 138
>At1g68480.1 68414.m07823 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 253
Score = 29.9 bits (64), Expect = 5.4
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 137 PDNRTNPYYFNSDLNKSKTLTQEPFNLPKVTETDVTSYLP 176
P N N YY N S++++ P NLP T D + P
Sbjct: 154 PHNHFNDYYLNPSFRGSRSISPSP-NLPTTTTVDYMADSP 192
>At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 Pfam
PF00400: WD domain, G-beta repeats;
Length = 1327
Score = 29.5 bits (63), Expect = 7.1
Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 2/81 (2%)
Query: 67 VSEEKDLVVGSNTELRTKLNRMDKKVTINQRPNLNLPPPSANVPTPAVTSTVVKSEPNQV 126
+ E+ D NTE T + T + P P P VT+T VK N
Sbjct: 1245 LEEKSDPSSTPNTETATSTENTSQTTTTPESVTTAPPEPITTAPPETVTTTAVKPTENAA 1304
Query: 127 MFNSLTELLLPDNRTNPYYFN 147
+T P R+ P F+
Sbjct: 1305 TERRVTN--YPPIRSQPIDFD 1323
>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 334
Score = 29.5 bits (63), Expect = 7.1
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 494 TPSVMTPTIPFEEPLAPITPVLPVVN-AAPDVPIEMP 529
TP V+TP P + P TP PVV P P+ P
Sbjct: 201 TPPVITPPTPTPPVITPPTPTPPVVTPPTPTPPVVTP 237
Score = 29.1 bits (62), Expect = 9.4
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 494 TPSVMTPTIPFEEPLAPITPVLPVVN-AAPDVPIEMP 529
TP V+TP P + P TP PVV P P+ P
Sbjct: 171 TPPVVTPPTPTPPVITPPTPTPPVVTPPTPTPPVITP 207
Score = 29.1 bits (62), Expect = 9.4
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 494 TPSVMTPTIPFEEPLAPITPVLPVVN-AAPDVPIEMP 529
TP V+TP P + P TP PV+ P P+ P
Sbjct: 191 TPPVVTPPTPTPPVITPPTPTPPVITPPTPTPPVVTP 227
>At2g23700.1 68415.m02830 expressed protein contains Pfam profile
PF04784: Protein of unknown function, DUF547
Length = 707
Score = 29.5 bits (63), Expect = 7.1
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 20 STLNQLDTKESLLSFPFDHIYACHSE 45
S+LNQ T + +S P D ++ACHS+
Sbjct: 328 SSLNQRSTFNNRISPPEDSVFACHSQ 353
>At1g72160.1 68414.m08343 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein similar to
GI:807956 from [Saccharomyces cerevisiae]similar to
polyphosphoinositide binding protein Ssh2p (GI:2739046)
{Glycine max}; contains Pfam PF00650 : CRAL/TRIO domain;
contains Pfam PF03765 : CRAL/TRIO, N-terminus
Length = 490
Score = 29.5 bits (63), Expect = 7.1
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 109 VPTPAVTSTVVKSEPNQVMFNSLTELLLPDNRTNPYYFNSDLNKSKTLTQEPFNLPKVTE 168
+P+P++T + V SE Q + TE L TNP K + T + P VTE
Sbjct: 16 LPSPSLTPSEV-SESTQDALPTETETLEKVTETNPPETADTTTKPEEETAAEHHPPTVTE 74
Query: 169 TDVTS 173
T+ S
Sbjct: 75 TETAS 79
>At5g12930.1 68418.m01483 expressed protein
Length = 439
Score = 29.1 bits (62), Expect = 9.4
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 328 QLGEADLREQSPIPKLMLQKSNRNRRCTE-TSTRRI-YDPAIPETSNKP---DNKVNTDR 382
+L E R+++ I KL + T+ T RR Y PA+ T P DN +
Sbjct: 271 ELEEIISRKKTIIKKLKRDVLVLEDKVTQLTRLRRSSYSPAVSNTHEFPMRMDNLLYDMD 330
Query: 383 FSSTNTFHDTKIKKDETKTVIVEEPDLDIVKTEPEIDWRTYASTKAGNETSL 434
+ ++ D++ + + ++E P +D VK EP +T S A + TSL
Sbjct: 331 VLTASSSSDSEATVNTPQRAVLEAP-VDSVKEEPATLGQTNKSAPAKSSTSL 381
>At2g43400.1 68415.m05394 electron transfer flavoprotein-ubiquinone
oxidoreductase family protein contains Pfam profile:
PF05187 Electron transfer flavoprotein-ubiquinone
oxidoreductase
Length = 633
Score = 29.1 bits (62), Expect = 9.4
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 345 LQKSNRNRRCTETSTRRIYDPAIPETSNKPDNKVNTDRFSSTNTFHDTKIKKDETKTVIV 404
L +SN N + S R+ DP IPE N P+ R+ + + ++ + K I
Sbjct: 539 LYRSNTNHDHDQPSHLRLRDPKIPEKVNFPEYAAPESRYCPARVYEYIEDEEGKPKLQIN 598
Query: 405 EEPDL-----DIVKTEPEIDW 420
+ L DI + I+W
Sbjct: 599 AQNCLHCKACDIKDPKQNIEW 619
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.309 0.127 0.360
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,844,697
Number of Sequences: 28952
Number of extensions: 588672
Number of successful extensions: 1555
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1533
Number of HSP's gapped (non-prelim): 31
length of query: 634
length of database: 12,070,560
effective HSP length: 86
effective length of query: 548
effective length of database: 9,580,688
effective search space: 5250217024
effective search space used: 5250217024
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 62 (29.1 bits)
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