GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000538-TA|BGIBMGA000538-PA|IPR004481|K+-dependent
Na+/Ca+ exchanger related-protein, IPR004836|Sodium/calcium exchanger
protein, IPR004837|Sodium/calcium exchanger membrane region
         (459 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2 pro...    26   2.5  
AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic acetylch...    24   7.5  
AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         24   9.9  

>DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2
           protein.
          Length = 961

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 23  NVIGTFITEGDIGVGTIVGSAVFNILAVAACCGIGAGM 60
           + +  F+T GD+ +    G  VF  L + A   + AGM
Sbjct: 359 HAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGM 396


>AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 7 protein.
          Length = 509

 Score = 24.2 bits (50), Expect = 7.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 421 VGRACLAMYAMFLILATLIEL 441
           V R CL ++ +F I+ATL  L
Sbjct: 480 VDRLCLIIFTLFTIIATLAVL 500


>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 23.8 bits (49), Expect = 9.9
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 195 ASEEGKDKNVNIDMDSKPNEMEIASPEENLYQPTAEDNTD 234
           AS+ G D+ V  +   +  E+E A  EE+  +  + +  D
Sbjct: 358 ASDAGYDRRVKQEQRDEEGELEAAEEEEDEEEEISVEEVD 397


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.322    0.138    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 445,562
Number of Sequences: 2123
Number of extensions: 18043
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 3
length of query: 459
length of database: 516,269
effective HSP length: 66
effective length of query: 393
effective length of database: 376,151
effective search space: 147827343
effective search space used: 147827343
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 49 (23.8 bits)