Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000536-TA|BGIBMGA000536-PA|undefined
         (552 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    25   1.4  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    24   2.4  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    24   2.4  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    23   7.3  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    23   7.3  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 482 RSVPDPAQSGRPFSYLEEIKRTVPVRPSTSPEE 514
           R +P P +S    +    +  T P  PS  PEE
Sbjct: 75  REIPSPKRSSPILAEKVSVSPTTPPTPSPPPEE 107


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 24  WLMVIIYSRLVVLFILNMFMIILVVVD-C-NAERTKYLSSTSVQVEAPPETE 73
           ++MV+   + VVL+ L +F++  +V D C  A  TK L    ++++   E E
Sbjct: 286 YVMVVYLLKNVVLYGLELFILAKIVTDLCQEANSTKKL-IVKIKIDIDKEDE 336


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 388 AFYLMTIVLKGYVYHVLNLVLIILLAMYTLEYGSALQKNEHSIHKMGILNAFDMQV 443
           +FYL        VY+ ++L L+IL  +    YGS +  NE S   + +L+    +V
Sbjct: 307 SFYLHKATTLETVYYFISLGLLILRLVSVCFYGSWI--NEESKLSLDLLSYVPREV 360


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 238 PDVPNLQGRRGTTAELQSQLPWAYIPASA 266
           PD       R     +Q + P+AYIP SA
Sbjct: 402 PDPEKFDPDRFLPENIQKRHPFAYIPFSA 430


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 238 PDVPNLQGRRGTTAELQSQLPWAYIPASA 266
           PD       R     +Q + P+AYIP SA
Sbjct: 402 PDPEKFDPDRFLPENIQKRHPFAYIPFSA 430


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.132    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,403
Number of Sequences: 317
Number of extensions: 4364
Number of successful extensions: 26
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 5
length of query: 552
length of database: 114,650
effective HSP length: 60
effective length of query: 492
effective length of database: 95,630
effective search space: 47049960
effective search space used: 47049960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)