Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000536-TA|BGIBMGA000536-PA|undefined
         (552 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56158| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.15 
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               32   1.0  
SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.2  
SB_54| Best HMM Match : Actin (HMM E-Value=0)                          30   4.2  
SB_34828| Best HMM Match : W2 (HMM E-Value=6.9)                        30   4.2  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.2  
SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.6  
SB_37750| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.6  
SB_33470| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.6  
SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07)        30   5.6  
SB_42047| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.3  
SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.3  
SB_34536| Best HMM Match : DUF680 (HMM E-Value=2.1)                    29   9.7  
SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19)                   29   9.7  
SB_26800| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.7  

>SB_56158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 35.1 bits (77), Expect = 0.15
 Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 13/116 (11%)

Query: 134 GISQSFRRMKTLLFKRSESPDVRSKSNPGSLDGSPNRSP-----QAQHVELDKKRAVN-F 187
           G S SF+  KT+  K+ + P  +  +       SP +SP     + +H  L +K+  N  
Sbjct: 80  GASGSFKLNKTVAEKKPKKPAAKKPAAKKPAAKSPQQSPRRSRQRRRHQSLPRKQQRNPL 139

Query: 188 PENLLS---LPQRLEN---MIAEQQRRLDKAVIDTAGRHSPPRTSQSMPQLTTETQ 237
           P+NLL    LP++L+N     ++  R L +     +    PPR S+ +P L  +T+
Sbjct: 140 PKNLLPKNLLPRKLQNPSLQRSQPPRNLRRKPPPRSPLKRPPR-SKVLPTLYNKTK 194


>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 32.3 bits (70), Expect = 1.0
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 483 SVPDPAQS-GRPFSYLEEIKRTVPVRPSTSPEEDPRWRREWTANTGPPLPAPDYSPQQPR 541
           S P P QS   P     ++ + + +   TSP   P++     A+TGP  P+P+YSP  P 
Sbjct: 687 STPQPRQSTALPLLTTRQLLQVILLCLGTSPTS-PQYS---PASTGPS-PSPEYSPSSPN 741

Query: 542 RLKSALKSAY 551
              +   SAY
Sbjct: 742 YTPNINTSAY 751


>SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1107

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 16/55 (29%), Positives = 19/55 (34%)

Query: 487  PAQSGRPFSYLEEIKRTVPVRPSTSPEEDPRWRREWTANTGPPLPAPDYSPQQPR 541
            P   G   +  + +    P  P T P   P         T PP P P   P QPR
Sbjct: 1006 PTNPGTTTNVPDPLPTDPPTEPPTDPPTPPPTEPPTPPPTEPPTPPPTDPPTQPR 1060


>SB_54| Best HMM Match : Actin (HMM E-Value=0)
          Length = 2486

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 498 EEIKRTVPVRPSTSPEEDPRWRREWT--ANTGPPLPAPDYSPQQPRRLKS 545
           + +  T P RP  S  +  R  R W   +NT PP+P  D S   P R  +
Sbjct: 365 DALLHTAPARPPFSTAQ--RTHRSWDPLSNTLPPVPTTDKSGNYPHRFST 412


>SB_34828| Best HMM Match : W2 (HMM E-Value=6.9)
          Length = 184

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 503 TVPVRPSTSPEEDPRWRREWTANTGPPLPAPDYSPQQPRRL 543
           T+P  P ++P   P+ +R       PP P P  S  +PRR+
Sbjct: 113 TLPTPPFSTPRPRPKAKRIRRLLPTPPPPTPPQSTPKPRRV 153



 Score = 29.5 bits (63), Expect = 7.3
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 487 PAQSGRPFSYLEEIKRTVPV-RPSTSPEEDPRWRREWTANTGPPLPAPDYSPQQPRR 542
           P  + RP    + I+R +P   P T P+  P+ RR     T PP P    +P+ PRR
Sbjct: 118 PFSTPRPRPKAKRIRRLLPTPPPPTPPQSTPKPRR--VLPTPPPKPP---TPRPPRR 169


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 3/109 (2%)

Query: 138 SFRRMKTLLFKRSESPDVRSKSNPGSLDGSPNRSPQAQHVELDK--KRAVNFPENLLSLP 195
           S+R+ +    KRS+S    S+S   S   S +RSP  +        +R   F E   S P
Sbjct: 605 SYRKSRDKGRKRSQSRS-SSRSRSSSYSRSRSRSPDRRKRSYSPPPRRRSPFRERRRSPP 663

Query: 196 QRLENMIAEQQRRLDKAVIDTAGRHSPPRTSQSMPQLTTETQPDVPNLQ 244
           +R     ++   R   A I ++   S  R+  + P+ +    P +  +Q
Sbjct: 664 RRTSRWSSQSPDRRSPARIKSSPARSRSRSQSASPRHSKSKSPALSKVQ 712


>SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1438

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 153 PDVRSKSNPGSLDGSPNRSPQAQHVELD 180
           PD  S S+P S  GSPN SP  +  ++D
Sbjct: 937 PDRNSISSPNSASGSPNSSPVLRRHDMD 964


>SB_37750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 759

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 163 SLDGSPNRSPQAQHVELDKKRAVNFPENLLSLPQRLEN 200
           ++D +   +  +   EL+KK+A N P N + +P  LEN
Sbjct: 146 AVDNAIRSNDDSTFTELEKKKAENKPTNEMPVPNALEN 183


>SB_33470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 478 WHHSRSVPDPAQSGRPFSYLEEIKRTVPVRPSTSPEEDPR 517
           WHH ++ PDP  +   F+  E  +  + ++P T P E+ +
Sbjct: 114 WHHCKATPDPCLTFSTFTAKE--RPRLQLQPRTKPPEETK 151


>SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07)
          Length = 1188

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 482 RSVPDPAQSGRPFSYLEEIKRTVPVRPSTSPEEDPRWRREWTANTGPPLPAPDYSPQQPR 541
           RS P P  S  P + +   + T P+  STS  +    R     +T  PLP   Y P +  
Sbjct: 759 RSTPKPTTSPVPTALVPTTQATTPM--STSTAKTAVGRLLAAISTSSPLPTTSYVPLKD- 815

Query: 542 RLKSALKSAYM 552
           RL + + S Y+
Sbjct: 816 RLPADVTSLYL 826


>SB_42047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 715

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 1/97 (1%)

Query: 136 SQSFRRMKTLLFKRSESPDVRSKSNPGSL-DGSPNRSPQAQHVELDKKRAVNFPENLLSL 194
           +Q FR ++  L  R +     S  N  +L DG+  +       E + +RA+    N LS 
Sbjct: 494 AQQFRSIQRRLLTRFKDKTPVSLQNLDTLLDGTYRQLLALSEAEEECERAIEASSNALSC 553

Query: 195 PQRLENMIAEQQRRLDKAVIDTAGRHSPPRTSQSMPQ 231
             RL N + +    +     +       PR SQS  Q
Sbjct: 554 ATRLINYLIKLWTNMSDKEFEALQMVLSPRVSQSEDQ 590


>SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1660

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 152  SPDVRSKSNPGSLDG-SPNR--SPQAQHVELDKKRAVNFPENLLSLPQRLENMIAEQQRR 208
            SPD R  S  GSLD  S  R  SPQ    E+++ ++   P++L    +   N++   Q R
Sbjct: 1227 SPDSRGNSRGGSLDNVSQQRRHSPQT-CPEINEPQSPKSPQDLHKTLRDGMNIVPVNQGR 1285

Query: 209  LDKAV 213
            LDK +
Sbjct: 1286 LDKNI 1290


>SB_34536| Best HMM Match : DUF680 (HMM E-Value=2.1)
          Length = 331

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 12/49 (24%), Positives = 25/49 (51%)

Query: 199 ENMIAEQQRRLDKAVIDTAGRHSPPRTSQSMPQLTTETQPDVPNLQGRR 247
           +N  + +  + +KA + TA   SP R ++S     T+T+  + + Q  +
Sbjct: 212 DNQSSRESEQSEKADVSTADDQSPSRVNESSQDCETDTKASLESAQNEK 260


>SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19)
          Length = 1199

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 7/91 (7%)

Query: 154  DVRSKSNPGSLDGSPNRSPQAQH-VELDKKRAVNFPENLLSLPQR-LENMIAEQQRRLDK 211
            D R   NP S      R+P+ +  V+ D+ R      +    P++  E+M  +++ + +K
Sbjct: 984  DTRKTRNPTSYSEGDERTPRRKREVDTDEGRR----RDRAPKPRKSFEDMFRKEKDKKEK 1039

Query: 212  AVIDTAGRHSPP-RTSQSMPQLTTETQPDVP 241
             +    GR SPP R S S  + T +    +P
Sbjct: 1040 PLGRGEGRESPPRRRSDSQDEYTDDEVMIIP 1070


>SB_26800| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 87

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 502 RTVPVRPSTSP---EEDPRWRREWTANTGPPLPAPDYSPQQPRRLKSAL 547
           RT P  P  SP   +  P WR    A   P  P  D++PQ     K  L
Sbjct: 39  RTYPRSPHRSPFPRDAQPEWRMMPDAGFSPYAPVRDFTPQMVLSRKELL 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.132    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,884,606
Number of Sequences: 59808
Number of extensions: 602920
Number of successful extensions: 1937
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1919
Number of HSP's gapped (non-prelim): 27
length of query: 552
length of database: 16,821,457
effective HSP length: 86
effective length of query: 466
effective length of database: 11,677,969
effective search space: 5441933554
effective search space used: 5441933554
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)