GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000536-TA|BGIBMGA000536-PA|undefined
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    31   0.55 
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    27   5.1  
SPBC27.01c |||secretory pathway protein Pga2 |Schizosaccharomyce...    27   5.1  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    27   9.0  
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom...    27   9.0  

>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 30.7 bits (66), Expect = 0.55
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 6/91 (6%)

Query: 169 NRSPQAQHVELDKKRAVNFPENLLSLPQRLENMIAEQQRRLDKAVIDTAGRHSPPRTSQS 228
           NR  + + +E+ ++     PENL+ L +   + + E+   LD+ + D       P   Q 
Sbjct: 256 NRGSKGEKIEISQQ----VPENLIELAKEKRSALIEKLADLDEEIADIYVMEEDPTPEQL 311

Query: 229 MPQL--TTETQPDVPNLQGRRGTTAELQSQL 257
           M  +  TT  +   P L G   +   +QS L
Sbjct: 312 MGAIRRTTLARKFTPVLMGSALSNVGVQSVL 342


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 220 HSPPRTSQSMPQLTTETQPDVPNLQGRRGTTAELQSQL 257
           HSPPR   +  Q   +  P + N +  +G T  L  +L
Sbjct: 235 HSPPRKVSAQEQQDWQIPPSISNWKNPKGYTIPLDKRL 272


>SPBC27.01c |||secretory pathway protein Pga2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 388 AFYLMTIVLKGYVYHVLNLVLIILLAMYTLEYGSALQKNEH--SIHKMGILNAFDMQVNH 445
           A YL +  LK ++  ++ +   +L+  Y ++ G+ +Q+ EH  S+ +  +    D ++ H
Sbjct: 6   AGYLQSYSLKDWIRIIVYVGGYMLIRPYLMKLGAKIQEREHRKSLLEGEVDGTLDPEMTH 65

Query: 446 G 446
           G
Sbjct: 66  G 66


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 167 SPNRSPQAQHVELDKKRAVNFPENLLSLPQRLENM-IAEQQRRLDKAVIDTAGRHSPPRT 225
           SP  +  + H E D   +     N     +   N  +++ Q  L ++ +D     SPP  
Sbjct: 283 SPTNTLPSYHTEADLDNSSIASSNRTQHTEDNYNKDVSDAQNSLGQSAVDLTTPSSPPIP 342

Query: 226 SQSMPQL-TTETQPDVP 241
             + P+L TT++ P  P
Sbjct: 343 RHTKPKLSTTQSTPVKP 359


>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 199 ENMIAEQQRRLDKAVIDTAGRHSPPRTSQSMPQLTTETQPDVPNLQGRRGTTAELQSQLP 258
           E++  E    L K  I  + R  PP++  S+ QL ++ +  VPN+   R   + L  +L 
Sbjct: 59  ESLQKEVNIFLTKIYIRESERE-PPQSHNSVFQLLSKIRNSVPNVSAFRNNLSILSKELS 117

Query: 259 WAYIPASAHRMR 270
           +       H  R
Sbjct: 118 FFSFARHIHNRR 129


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.132    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,169,689
Number of Sequences: 5004
Number of extensions: 82351
Number of successful extensions: 235
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 232
Number of HSP's gapped (non-prelim): 7
length of query: 552
length of database: 2,362,478
effective HSP length: 76
effective length of query: 476
effective length of database: 1,982,174
effective search space: 943514824
effective search space used: 943514824
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)