Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000536-TA|BGIBMGA000536-PA|undefined
(552 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1022 - 25371291-25371910,25373593-25374046 34 0.26
04_03_0181 - 12327281-12328620,12330922-12331015,12331079-123311... 33 0.45
03_01_0415 + 3191392-3191952 33 0.45
03_01_0578 + 4270835-4271482,4271763-4272140,4272353-4272444,427... 32 1.4
05_05_0036 - 21758409-21758531,21758891-21759206,21759964-217611... 31 2.4
07_01_0678 - 5103836-5104613,5104697-5104888,5104994-5105036,510... 31 3.1
05_07_0009 - 27015346-27015705,27016552-27016676,27016778-270168... 30 5.5
01_06_0868 - 32587618-32587875,32588239-32588318,32588518-325885... 29 7.3
12_01_0247 - 1836971-1837810 29 9.6
04_04_1572 - 34527730-34527859,34528077-34528136,34528253-345283... 29 9.6
03_01_0658 + 4818401-4818540,4818605-4819201,4819694-4819949,482... 29 9.6
01_06_0747 - 31645136-31646521,31647870-31648142,31649080-316491... 29 9.6
>12_02_1022 - 25371291-25371910,25373593-25374046
Length = 357
Score = 34.3 bits (75), Expect = 0.26
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 174 AQHVELDKKRAVNFPENLLSLPQRLENMIAE-QQRRLDKAVIDTAGRHSPPRTSQSMPQL 232
A + L ++R + L LP +E A Q RRLD + A +PPR+ +S Q
Sbjct: 49 ASLLTLRRRRIALWSSAPLPLPSTMEERDAHPQDRRLDAPFLLPAAPCAPPRSPRSCHQQ 108
Query: 233 TTETQPDVPNLQGRRGTTAELQSQLPWAYIPASAHR 268
T +QP + G G +L + P + P R
Sbjct: 109 T--SQPAIEEGDGSYGRMLQLSAPHPPSLSPRRRQR 142
>04_03_0181 -
12327281-12328620,12330922-12331015,12331079-12331183,
12331404-12332592,12333268-12333461
Length = 973
Score = 33.5 bits (73), Expect = 0.45
Identities = 20/98 (20%), Positives = 39/98 (39%)
Query: 214 IDTAGRHSPPRTSQSMPQLTTETQPDVPNLQGRRGTTAELQSQLPWAYIPASAHRMRDQX 273
+ AGR + R+ + +P + ++ R TTA S P A P +++ ++D
Sbjct: 153 LSAAGRSTSARSVSGSSRTQPFPKPTLARVKSERATTAAAASPRPPALAPPASNSLKDMA 212
Query: 274 XXXXXXXXXXXXXYTAIQPFRKASVHRAASSLSSLTQK 311
+ + S +A +SL +TQ+
Sbjct: 213 RTAPSASSKAPSTLQKSKLSPRPSPDKAVASLKPITQR 250
>03_01_0415 + 3191392-3191952
Length = 186
Score = 33.5 bits (73), Expect = 0.45
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 483 SVPDPAQSGRPFSYLEEIKRTVPVRPSTSPEEDPR-WRREWTANTGPP--LPAPDYSPQQ 539
S P+P + ++ R + + PSTSP P W +N+ PP LP P +S Q
Sbjct: 65 SSPEPKTPKSQPHHGKKRSRAISISPSTSPPSRPELWAGPAFSNSPPPSSLPIPKFSLHQ 124
Query: 540 PRRLKSALKSA 550
R + L A
Sbjct: 125 KRSVSLELPPA 135
>03_01_0578 +
4270835-4271482,4271763-4272140,4272353-4272444,
4272637-4273240
Length = 573
Score = 31.9 bits (69), Expect = 1.4
Identities = 20/91 (21%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 148 KRSESPDVRSKSNPGSLDGSPNRSPQAQHVELDKKRAVNFPENLLSLPQRLENMIAEQQR 207
++S + +S P +P+RSP A+ V ++ + + S P + + + ++Q
Sbjct: 202 QKSAPTKFKQESKPQERPNTPSRSP-AKIVSAKQEINKDTRKTSASSPSQNGSAVVKKQM 260
Query: 208 RLDKAVIDTAGRHSPPRTSQSMPQLTTETQP 238
D + ++SPP+ ++ P T T P
Sbjct: 261 SKDSKKESASEKNSPPKLYKTSPPTPTPTPP 291
>05_05_0036 -
21758409-21758531,21758891-21759206,21759964-21761121,
21761236-21761333
Length = 564
Score = 31.1 bits (67), Expect = 2.4
Identities = 21/98 (21%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 135 ISQSFRRMKTLLFKRSESPDVRSKSNPGSLDGSPNRSPQAQHVELDKKRAVNFPENLLSL 194
++ ++ KT + + +PD S S S++ + R PQ + K R +F +L
Sbjct: 218 VTNQTKQNKTSIIVSTHAPDKSSSSKQSSVNKNTVRVPQKRRKLEIKMRRSHFDPEEFAL 277
Query: 195 PQRLENMIAEQQRRLDKA----VIDTAGRHSPPRTSQS 228
QR + + ++++ + + ++DT PPR+ +
Sbjct: 278 YQRYQTKVHKEKKVSESSYKRFLVDTPIVFVPPRSGDN 315
>07_01_0678 -
5103836-5104613,5104697-5104888,5104994-5105036,
5105712-5105835,5105924-5106016,5106754-5106931,
5107032-5107138,5108098-5108179,5108277-5108314,
5108409-5108495,5109025-5109135,5109282-5109773
Length = 774
Score = 30.7 bits (66), Expect = 3.1
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 498 EEIKRTVPVRPSTSPEEDPRWRREWTANTGPPLPAPDYSPQQPRRLKSA 546
EE + P P+ +PE PR R A P P P P++PRR +A
Sbjct: 69 EEEEAPAPA-PAPAPEPAPRKARLPRACNSKPKPPPPPPPERPRRRAAA 116
>05_07_0009 -
27015346-27015705,27016552-27016676,27016778-27016853,
27016923-27017105,27018000-27018077,27018159-27018239,
27018347-27018412,27018491-27018556,27019126-27019176,
27019286-27019378,27019498-27019625,27019713-27019851,
27021039-27021136,27021332-27021401,27021565-27021654
Length = 567
Score = 29.9 bits (64), Expect = 5.5
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 8/87 (9%)
Query: 452 ELPR-IPTRDPIRIEXXXXXXXXXXXXWHHSRSVPDPAQSGRPFSYLEEIKRTVPVRPST 510
E PR +P R+P+ + SVPDP + +P ++ VPV P T
Sbjct: 309 EAPRMVPVREPLELPERLLLTYKPEE--QEEDSVPDPVEEEKP-----PVEEPVPVPPVT 361
Query: 511 SPEEDPRWRREWTANTGPPLPAPDYSP 537
P + A+TG L D +P
Sbjct: 362 EAVSPPPPPKTKVADTGDLLGLNDPNP 388
>01_06_0868 -
32587618-32587875,32588239-32588318,32588518-32588583,
32589896-32590523
Length = 343
Score = 29.5 bits (63), Expect = 7.3
Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 486 DPAQSGRPFSY-LEEIKRTVPVRPSTSPEEDPRWRREWTANTGPPLPAPD 534
D G+P++Y L P S SP W R W GP P D
Sbjct: 63 DNLVDGKPYAYFLYTPFSLTPSSASASPRRAQPWGRTWARPPGPTWPRSD 112
>12_01_0247 - 1836971-1837810
Length = 279
Score = 29.1 bits (62), Expect = 9.6
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 204 EQQRRLDKAVIDTAGRHSPPRTSQSMPQLTTETQPDVP-NLQGRRGTTAELQSQL 257
EQ R+D+ +++ S + +T T+ DVP N+ RRG + ++ L
Sbjct: 188 EQDARVDRKIVEICAMESLSGLEVNRSGMTNFTKKDVPNNISFRRGVVGDWRNHL 242
>04_04_1572 -
34527730-34527859,34528077-34528136,34528253-34528375,
34528506-34528960,34529343-34529876,34530638-34531501
Length = 721
Score = 29.1 bits (62), Expect = 9.6
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 374 NLGSIYAKEITRQGAFYLMTIVLKGYVYHVLNLVLIILLAMYTLEYGSALQKNEHSIHKM 433
N GS+ + G FY+++ GYV+ + L L +L+ + T Y L +S + +
Sbjct: 198 NTGSLAWSLASAFGYFYMVS-AWGGYVFIINLLPLYVLVLLVTGRYSQRLYVAYNSTYVL 256
Query: 434 GILNAFDMQ 442
G+L A ++
Sbjct: 257 GMLLAMQIR 265
>03_01_0658 +
4818401-4818540,4818605-4819201,4819694-4819949,
4820038-4820723,4821009-4821147,4821378-4821514,
4821805-4822077,4822175-4822382,4822660-4822731,
4823230-4823460,4824269-4824532,4825127-4825268,
4825355-4825467
Length = 1085
Score = 29.1 bits (62), Expect = 9.6
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 7/40 (17%)
Query: 498 EEIKRTVPVRPSTSPEEDPR------WRREWTANTGPPLP 531
+E+K + P+T PEED W R+W N PP P
Sbjct: 523 QEVKSVLTEAPAT-PEEDSYFWISTDWLRQWADNVNPPSP 561
>01_06_0747 -
31645136-31646521,31647870-31648142,31649080-31649148,
31649486-31649614
Length = 618
Score = 29.1 bits (62), Expect = 9.6
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 510 TSPEEDPRWRREWTANTGPPLPAPDYSPQ 538
T P+ P ++++W + P PAP PQ
Sbjct: 315 TQPQSFPPYQQQWPQQSSQPAPAPVAQPQ 343
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.132 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,188,045
Number of Sequences: 37544
Number of extensions: 548812
Number of successful extensions: 1739
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1734
Number of HSP's gapped (non-prelim): 16
length of query: 552
length of database: 14,793,348
effective HSP length: 86
effective length of query: 466
effective length of database: 11,564,564
effective search space: 5389086824
effective search space used: 5389086824
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)
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