GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000536-TA|BGIBMGA000536-PA|undefined
         (552 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL662844-4|CAI18325.1|  136|Homo sapiens psoriasis susceptibilit...    35   0.65 
BA000025-63|BAB63315.1|  136|Homo sapiens SPR1 protein.                34   1.5  
AL773544-4|CAI18481.1|  136|Homo sapiens psoriasis susceptibilit...    34   1.5  
AL662867-4|CAI17721.1|  136|Homo sapiens psoriasis susceptibilit...    34   1.5  
AF484420-1|AAO49377.1|  136|Homo sapiens psoriasis susceptibilit...    34   1.5  
AB202103-4|BAE78627.1|  136|Homo sapiens chromosome 6 open readi...    34   1.5  
AB103620-3|BAF31284.1|  136|Homo sapiens hypothetical protein pr...    34   1.5  
AB088114-3|BAC54949.1|  136|Homo sapiens hypothetical protein pr...    34   1.5  
AB031480-1|BAA88131.1|  136|Homo sapiens SPR1 protein.                 34   1.5  
U77783-1|AAC15910.1| 1336|Homo sapiens N-methyl-D-aspartate rece...    33   2.6  
AB209292-1|BAD92529.1|  610|Homo sapiens N-methyl-D-aspartate re...    33   2.6  
BC104912-1|AAI04913.1| 1236|Homo sapiens PPFIA2 protein protein.       32   4.6  
AF034799-1|AAC26100.1| 1257|Homo sapiens liprin-alpha2 protein.        32   4.6  
AB210009-1|BAE06091.1| 1258|Homo sapiens PPFIA2 variant protein ...    32   4.6  

>AL662844-4|CAI18325.1|  136|Homo sapiens psoriasis susceptibility 1
           candidate 2 protein.
          Length = 136

 Score = 35.1 bits (77), Expect = 0.65
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 485 PDPAQSGRPFSYLEEIKRTVPVRPSTSPEEDPRWRREWTA------NTGPPLPAPDYSPQ 538
           P P +  RP+  L E    +P  P T P + PR    W A      N  PP P  D  PQ
Sbjct: 64  PPPTRPSRPWRDLPETGVWLPEPPRTDPPQPPRPDDPWPAGPQPPENPWPPAPEVDNRPQ 123

Query: 539 Q 539
           +
Sbjct: 124 E 124


>BA000025-63|BAB63315.1|  136|Homo sapiens SPR1 protein.
          Length = 136

 Score = 33.9 bits (74), Expect = 1.5
 Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 485 PDPAQSGRPFSYLEEIKRTVPVRPSTSPEEDPRWRREWTA------NTGPPLPAPDYSPQ 538
           P P +  RP+  L E     P  P T P + PR    W A      N  PP P  D  PQ
Sbjct: 64  PPPTRPSRPWRDLPETGVWPPEPPRTDPPQPPRPDDPWPAGPQPPENPWPPAPEVDNRPQ 123

Query: 539 Q 539
           +
Sbjct: 124 E 124


>AL773544-4|CAI18481.1|  136|Homo sapiens psoriasis susceptibility 1
           candidate 2 protein.
          Length = 136

 Score = 33.9 bits (74), Expect = 1.5
 Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 485 PDPAQSGRPFSYLEEIKRTVPVRPSTSPEEDPRWRREWTA------NTGPPLPAPDYSPQ 538
           P P +  RP+  L E     P  P T P + PR    W A      N  PP P  D  PQ
Sbjct: 64  PPPTRPSRPWRDLPETGVWPPEPPRTDPPQPPRPDDPWPAGPQPPENPWPPAPEVDNRPQ 123

Query: 539 Q 539
           +
Sbjct: 124 E 124


>AL662867-4|CAI17721.1|  136|Homo sapiens psoriasis susceptibility 1
           candidate 2 protein.
          Length = 136

 Score = 33.9 bits (74), Expect = 1.5
 Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 485 PDPAQSGRPFSYLEEIKRTVPVRPSTSPEEDPRWRREWTA------NTGPPLPAPDYSPQ 538
           P P +  RP+  L E     P  P T P + PR    W A      N  PP P  D  PQ
Sbjct: 64  PPPTRPSRPWRDLPETGVWPPEPPRTDPPQPPRPDDPWPAGPQPPENPWPPAPEVDNRPQ 123

Query: 539 Q 539
           +
Sbjct: 124 E 124


>AF484420-1|AAO49377.1|  136|Homo sapiens psoriasis susceptibility 1
           candidate 2 protein.
          Length = 136

 Score = 33.9 bits (74), Expect = 1.5
 Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 485 PDPAQSGRPFSYLEEIKRTVPVRPSTSPEEDPRWRREWTA------NTGPPLPAPDYSPQ 538
           P P +  RP+  L E     P  P T P + PR    W A      N  PP P  D  PQ
Sbjct: 64  PPPTRPSRPWRDLPETGVWPPEPPRTDPPQPPRPDDPWPAGPQPPENPWPPAPEVDNRPQ 123

Query: 539 Q 539
           +
Sbjct: 124 E 124


>AB202103-4|BAE78627.1|  136|Homo sapiens chromosome 6 open reading
           frame 17 protein.
          Length = 136

 Score = 33.9 bits (74), Expect = 1.5
 Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 485 PDPAQSGRPFSYLEEIKRTVPVRPSTSPEEDPRWRREWTA------NTGPPLPAPDYSPQ 538
           P P +  RP+  L E     P  P T P + PR    W A      N  PP P  D  PQ
Sbjct: 64  PPPTRPSRPWRDLPETGVWPPEPPRTDPPQPPRPDDPWPAGPQPPENPWPPAPEVDNRPQ 123

Query: 539 Q 539
           +
Sbjct: 124 E 124


>AB103620-3|BAF31284.1|  136|Homo sapiens hypothetical protein
           protein.
          Length = 136

 Score = 33.9 bits (74), Expect = 1.5
 Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 485 PDPAQSGRPFSYLEEIKRTVPVRPSTSPEEDPRWRREWTA------NTGPPLPAPDYSPQ 538
           P P +  RP+  L E     P  P T P + PR    W A      N  PP P  D  PQ
Sbjct: 64  PPPTRPSRPWRDLPETGVWPPEPPRTDPPQPPRPDDPWPAGPQPPENPWPPAPEVDNRPQ 123

Query: 539 Q 539
           +
Sbjct: 124 E 124


>AB088114-3|BAC54949.1|  136|Homo sapiens hypothetical protein
           protein.
          Length = 136

 Score = 33.9 bits (74), Expect = 1.5
 Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 485 PDPAQSGRPFSYLEEIKRTVPVRPSTSPEEDPRWRREWTA------NTGPPLPAPDYSPQ 538
           P P +  RP+  L E     P  P T P + PR    W A      N  PP P  D  PQ
Sbjct: 64  PPPTRPSRPWRDLPETGVWPPEPPRTDPPQPPRPDDPWPAGPQPPENPWPPAPEVDNRPQ 123

Query: 539 Q 539
           +
Sbjct: 124 E 124


>AB031480-1|BAA88131.1|  136|Homo sapiens SPR1 protein.
          Length = 136

 Score = 33.9 bits (74), Expect = 1.5
 Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 485 PDPAQSGRPFSYLEEIKRTVPVRPSTSPEEDPRWRREWTA------NTGPPLPAPDYSPQ 538
           P P +  RP+  L E     P  P T P + PR    W A      N  PP P  D  PQ
Sbjct: 64  PPPTRPSRPWRDLPETGVWPPEPPRTDPPQPPRPDDPWPAGPQPPENPWPPAPEVDNRPQ 123

Query: 539 Q 539
           +
Sbjct: 124 E 124


>U77783-1|AAC15910.1| 1336|Homo sapiens N-methyl-D-aspartate receptor
            2D subunit precursor protein.
          Length = 1336

 Score = 33.1 bits (72), Expect = 2.6
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 484  VPDPAQSGRPFSYLEEIKRTVPVRPSTSPEEDPRWRREWTANTGPPLPAPDY 535
            +P PA + R    L    R  P R  T P    R R    A+ GPPLP   +
Sbjct: 1262 LPPPAPTSRSLEDLSSCPRAAPARRLTGPSRHAR-RCPHAAHWGPPLPTASH 1312


>AB209292-1|BAD92529.1|  610|Homo sapiens N-methyl-D-aspartate
           receptor subunit 2D precursor variant protein.
          Length = 610

 Score = 33.1 bits (72), Expect = 2.6
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 484 VPDPAQSGRPFSYLEEIKRTVPVRPSTSPEEDPRWRREWTANTGPPLPAPDY 535
           +P PA + R    L    R  P R  T P    R R    A+ GPPLP   +
Sbjct: 536 LPPPAPTSRSLEDLSSCPRAAPARRLTGPSRHAR-RCPHAAHWGPPLPTASH 586


>BC104912-1|AAI04913.1| 1236|Homo sapiens PPFIA2 protein protein.
          Length = 1236

 Score = 32.3 bits (70), Expect = 4.6
 Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 6/100 (6%)

Query: 157 SKSNPGSLDGSPNRSPQAQHVELDKKRAVNFPENLLSLPQRLENMIAEQQRRLDKAVIDT 216
           + S+P S   +P  +P++   E+D+   +  P +L     R +  + E+  R DKA I  
Sbjct: 714 ASSSPPSGHSTPKLTPRSPAREMDRMGVMTLPSDLRK--HRRKIAVVEEDGREDKATIKC 771

Query: 217 AGRHSPPRTSQSMPQLTTETQPDVPNLQGRRGTTAELQSQ 256
               SPP T +++    T T P   +   R   +  L+ +
Sbjct: 772 --ETSPPPTPRALRM--THTLPSSYHNDARSSLSVSLEPE 807


>AF034799-1|AAC26100.1| 1257|Homo sapiens liprin-alpha2 protein.
          Length = 1257

 Score = 32.3 bits (70), Expect = 4.6
 Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 6/100 (6%)

Query: 157 SKSNPGSLDGSPNRSPQAQHVELDKKRAVNFPENLLSLPQRLENMIAEQQRRLDKAVIDT 216
           + S+P S   +P  +P++   E+D+   +  P +L     R +  + E+  R DKA I  
Sbjct: 714 ASSSPPSGHSTPKLTPRSPAREMDRMGVMTLPSDLRK--HRRKIAVVEEDGREDKATIKC 771

Query: 217 AGRHSPPRTSQSMPQLTTETQPDVPNLQGRRGTTAELQSQ 256
               SPP T +++    T T P   +   R   +  L+ +
Sbjct: 772 --ETSPPPTPRALRM--THTLPSSYHNDARSSLSVSLEPE 807


>AB210009-1|BAE06091.1| 1258|Homo sapiens PPFIA2 variant protein
           protein.
          Length = 1258

 Score = 32.3 bits (70), Expect = 4.6
 Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 6/100 (6%)

Query: 157 SKSNPGSLDGSPNRSPQAQHVELDKKRAVNFPENLLSLPQRLENMIAEQQRRLDKAVIDT 216
           + S+P S   +P  +P++   E+D+   +  P +L     R +  + E+  R DKA I  
Sbjct: 725 ASSSPPSGHSTPKLTPRSPAREMDRMGVMTLPSDLRK--HRRKIAVVEEDGREDKATIKC 782

Query: 217 AGRHSPPRTSQSMPQLTTETQPDVPNLQGRRGTTAELQSQ 256
               SPP T +++    T T P   +   R   +  L+ +
Sbjct: 783 --ETSPPPTPRALRM--THTLPSSYHNDARSSLSVSLEPE 818


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.317    0.132    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,584,383
Number of Sequences: 224733
Number of extensions: 2829048
Number of successful extensions: 8329
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 8311
Number of HSP's gapped (non-prelim): 23
length of query: 552
length of database: 73,234,838
effective HSP length: 94
effective length of query: 458
effective length of database: 52,109,936
effective search space: 23866350688
effective search space used: 23866350688
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 68 (31.5 bits)