Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000536-TA|BGIBMGA000536-PA|undefined
(552 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g22380.1 68416.m02825 expressed protein 31 1.5
At5g11890.1 68418.m01391 expressed protein 31 2.6
At5g04970.1 68418.m00526 pectinesterase, putative contains simil... 30 3.5
At1g70620.2 68414.m08137 cyclin-related contains weak similarity... 30 3.5
At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 30 3.5
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 30 4.6
At1g70180.2 68414.m08076 sterile alpha motif (SAM) domain-contai... 30 4.6
At1g70180.1 68414.m08075 sterile alpha motif (SAM) domain-contai... 30 4.6
At5g40030.1 68418.m04854 protein kinase, putative similar to stp... 29 8.0
At5g05190.1 68418.m00553 expressed protein similar to unknown pr... 29 8.0
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 29 8.0
>At3g22380.1 68416.m02825 expressed protein
Length = 1550
Score = 31.5 bits (68), Expect = 1.5
Identities = 31/146 (21%), Positives = 52/146 (35%), Gaps = 3/146 (2%)
Query: 155 VRSKSNPGSLDGSPNRSPQAQHVELDKKRAVNFPENLLSLPQRLENMIAEQQRRLDKAVI 214
V+S SN N SP+ + + ++ P ++ L N+ +QQ R ++ I
Sbjct: 1257 VQSSSNQVQSQQWKNNSPRTTNTTQAQSPSMLSPSTSVAAASSLRNIPHKQQSRPQQSQI 1316
Query: 215 DTAGRHSPPRTSQSMPQL---TTETQPDVPNLQGRRGTTAELQSQLPWAYIPASAHRMRD 271
A P + M Q+ T P P L G T++ ++ ASA +
Sbjct: 1317 SFAANSKPMTSGSPMQQVQGGTNHQAPSPPMLVGSPSTSSVSKNASGSPRTTASASSAAN 1376
Query: 272 QXXXXXXXXXXXXXXYTAIQPFRKAS 297
+ +QP AS
Sbjct: 1377 KGGQASTTTHSASQPSKNLQPASAAS 1402
>At5g11890.1 68418.m01391 expressed protein
Length = 287
Score = 30.7 bits (66), Expect = 2.6
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 222 PPRTSQSMPQLTTETQPDVPNLQGRRGTTAELQSQLPWAYIPASAHRMRDQ 272
PP + P + + P P GTT + +Q P YIPA+ R Q
Sbjct: 11 PPTATNGAPPVGSIPPPPAPATVTSNGTTNGMANQKPQVYIPANRPVYRPQ 61
>At5g04970.1 68418.m00526 pectinesterase, putative contains
similarity to pectinesterase from Vitis vinifera
GI:15081598, Prunus persica SP|Q43062; contains Pfam
profile PF01095 pectinesterase
Length = 624
Score = 30.3 bits (65), Expect = 3.5
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 505 PVRPSTSPEEDPRWRREWTANTGPPLPAPDYSPQQPRRL 543
P +P + P P + T PP P P SP QP L
Sbjct: 44 PTQPPSQPPTQPPTQPPSHPPTQPPTPPPSQSPSQPSPL 82
>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 884
Score = 30.3 bits (65), Expect = 3.5
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 479 HHSRS-VPDPAQSGRPFSYLEEIKRTVPVRPSTSPEEDPRWRREWTANT-GPPLPAPDYS 536
H +R VP P Q G P ++ + P PS P P+W G P +P Y
Sbjct: 30 HQARPPVPPPTQPGGPPAWYSN-QFHHPHSPSPPPPPPPQWGPPSPHYPQGQPYSSPAYP 88
Query: 537 PQQP 540
P QP
Sbjct: 89 PHQP 92
>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 897
Score = 30.3 bits (65), Expect = 3.5
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 479 HHSRS-VPDPAQSGRPFSYLEEIKRTVPVRPSTSPEEDPRWRREWTANT-GPPLPAPDYS 536
H +R VP P Q G P ++ + P PS P P+W G P +P Y
Sbjct: 30 HQARPPVPPPTQPGGPPAWYSN-QFHHPHSPSPPPPPPPQWGPPSPHYPQGQPYSSPAYP 88
Query: 537 PQQP 540
P QP
Sbjct: 89 PHQP 92
>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
to gi_11935088_gb_AAG41964
Length = 209
Score = 29.9 bits (64), Expect = 4.6
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 505 PVRPSTSPEEDPRWRREWTANTGPPLPAPDYSPQQPRRLKSA 546
P ++SP E P+ + ++ PP P P+ SP P + S+
Sbjct: 59 PTASASSPVESPKSPAPVSESSPPPTPVPESSPPVPAPMVSS 100
>At1g70180.2 68414.m08076 sterile alpha motif (SAM)
domain-containing protein contains Pfam profile PF00536:
SAM domain (Sterile alpha motif)
Length = 460
Score = 29.9 bits (64), Expect = 4.6
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 156 RSKSNPGSLDGSPNRSPQAQHVELDKKRAVNFPENLLSLPQRLENMIAEQ-QRRLDKAVI 214
RS+ P SLD P R + + L R ++S E +RR + +
Sbjct: 113 RSEQPPRSLDTRP-RMAEPRDRPLSSSRTARGSSQMISSSSSHPAWALEDLRRRSPERFV 171
Query: 215 DTAGRHSPPRTSQSMPQLTTETQP 238
DT+ SPPR + S + E P
Sbjct: 172 DTSRGRSPPRNAGSFIGIPREPSP 195
>At1g70180.1 68414.m08075 sterile alpha motif (SAM)
domain-containing protein contains Pfam profile PF00536:
SAM domain (Sterile alpha motif)
Length = 456
Score = 29.9 bits (64), Expect = 4.6
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 156 RSKSNPGSLDGSPNRSPQAQHVELDKKRAVNFPENLLSLPQRLENMIAEQ-QRRLDKAVI 214
RS+ P SLD P R + + L R ++S E +RR + +
Sbjct: 113 RSEQPPRSLDTRP-RMAEPRDRPLSSSRTARGSSQMISSSSSHPAWALEDLRRRSPERFV 171
Query: 215 DTAGRHSPPRTSQSMPQLTTETQP 238
DT+ SPPR + S + E P
Sbjct: 172 DTSRGRSPPRNAGSFIGIPREPSP 195
>At5g40030.1 68418.m04854 protein kinase, putative similar to stpk1
protein kinase [Solanum tuberosum]
gi|1200256|emb|CAA62476
Length = 499
Score = 29.1 bits (62), Expect = 8.0
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 373 GNLGSIYAKEITRQGAFYLMTIVLKG 398
G++GS+Y E+ G F+ M ++ KG
Sbjct: 123 GDIGSVYLAELREMGCFFAMKVMDKG 148
>At5g05190.1 68418.m00553 expressed protein similar to unknown
protein (emb|CAB88044.1)
Length = 615
Score = 29.1 bits (62), Expect = 8.0
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 505 PVRPSTSPEEDPRWRRE 521
P RP PE PRWRRE
Sbjct: 438 PQRPMEQPEYHPRWRRE 454
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 29.1 bits (62), Expect = 8.0
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 114 GRDVEEASMPSDKSTKIPRPGISQSFRR--MKTLLFKRSESPDVRSKSNPGSLDGSPNRS 171
GR + S +K PR +S+S RR +++ RS SPD + KS P ++ S +RS
Sbjct: 223 GRGRSHSRSRSLSRSKSPRKDLSKSPRRSLSRSISKSRSPSPD-KKKSPPRAMSRSKSRS 281
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.132 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,224,588
Number of Sequences: 28952
Number of extensions: 426226
Number of successful extensions: 1299
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1287
Number of HSP's gapped (non-prelim): 19
length of query: 552
length of database: 12,070,560
effective HSP length: 85
effective length of query: 467
effective length of database: 9,609,640
effective search space: 4487701880
effective search space used: 4487701880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)
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