Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000535-TA|BGIBMGA000535-PA|IPR008937|Ras guanine
nucleotide exchange factor, IPR001895|Guanine-nucleotide dissociation
stimulator CDC25
         (433 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              24   2.2  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   3.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   5.0  

>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 41  TSDPTLLHGTGLSYYDLSTVLTPGVKAIPNH--PYTNCTTEKSDIEYRDGQIGKAEVKDL 98
           T  P  +  TG S   +  V    V     +   Y  C  +K ++   +G   +   +D+
Sbjct: 28  TLQPICVGETGTSQKIIDEVYNGNVNVEDENVQSYVECMMKKFNVVDENGNFNEKNTRDI 87

Query: 99  VEKELND 105
           V+  L+D
Sbjct: 88  VQAVLDD 94


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 10/37 (27%), Positives = 20/37 (54%)

Query: 187 QGDILTLGLTPVELANQLTIVELHRLSFVGPEEFVQT 223
           Q  I  + L+P+      + +  H L++V  E+FV++
Sbjct: 248 QSGIFGMALSPLTQNLYYSALSSHNLNYVNTEQFVKS 284


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 9/21 (42%), Positives = 10/21 (47%)

Query: 243 HHIDTKCTRNLEAYADWFNRL 263
           H I+  C  NL  Y  W N L
Sbjct: 576 HFINHSCDPNLAVYGVWINCL 596


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.131    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,457
Number of Sequences: 429
Number of extensions: 4109
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 3
length of query: 433
length of database: 140,377
effective HSP length: 60
effective length of query: 373
effective length of database: 114,637
effective search space: 42759601
effective search space used: 42759601
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)